Name

adams.flow.transformer.ImageObjectOverlapMatrix

Synopsis

Generates a matrix of overlapping image objects (annotations vs predictions) and their labels.
When outputting not just overlaps, a separate column 'Overlap' is output as well, indicating whether this row represents an overlap ('yes') or not ('no')

Additional information

Flow input/output:
- input: adams.data.image.AbstractImageContainer, adams.data.report.Report, adams.data.report.ReportHandler
- output: adams.data.spreadsheet.SpreadSheet

Options

• loggingLevel
  

  The logging level for outputting errors and debugging output.

  command-line	-logging-level <OFF|SEVERE|WARNING|INFO|CONFIG|FINE|FINER|FINEST>
  default	WARNING
  min-user-mode	Expert

  
  
• name
  

  The name of the actor.

  command-line	-name <java.lang.String>
  default	ImageObjectOverlapMatrix

  
  
• annotations
  

  The annotations to attach to this actor.

  command-line	-annotation <adams.core.base.BaseAnnotation>
  default

  
  
• skip
  

  If set to true, transformation is skipped and the input token is just forwarded as it is.

  command-line	-skip <boolean>
  default	false

  
  
• stopFlowOnError
  

  If set to true, the flow execution at this level gets stopped in case this actor encounters an error; the error gets propagated; useful for critical actors.

  command-line	-stop-flow-on-error <boolean>
  default	false
  min-user-mode	Expert

  
  
• silent
  

  If enabled, then no errors are output in the console; Note: the enclosing actor handler must have this enabled as well.

  command-line	-silent <boolean>
  default	false
  min-user-mode	Expert

  
  
• storageName
  

  The name of the storage item to merge with (Report or ReportHandler).

  command-line	-storage-name <adams.flow.control.StorageName>
  default	storage

  
  
• finder
  

  The object finder for locating the objects of interest.

  command-line	-finder <adams.data.objectfinder.ObjectFinder>
  default	adams.data.objectfinder.AllFinder

  
  
• algorithm
  

  The algorithm to use for determining the overlapping objects.

  command-line	-algorithm <adams.data.objectoverlap.ObjectOverlap>
  default	adams.data.objectoverlap.AreaRatio

  
  
• matrixOutput
  

  What matches to store in the matrix.

  command-line	-matrix-output <ALL_MATCHES|ONLY_HIGHEST_LABEL>
  default	ALL_MATCHES

  
  
• labelKey
  

  The meta-data key that holds the label.

  command-line	-label-key <java.lang.String>
  default	type

  
  
• onlyOverlaps
  

  If enabled, outputs only overlaps and omits entries with no corresponding match.

  command-line	-only-overlaps <boolean>
  default	true

  
  
• labelMissed
  

  The label to use for annotations that have no corresponding predictions.

  command-line	-label-missed <java.lang.String>
  default	???

  
  
• labelAdditional
  

  The label to use for predictions with no corresponding annotations.

  command-line	-label-additional <java.lang.String>
  default	???