Package adams.flow.transformer
Class WekaGenericPLSMatrixAccess
- java.lang.Object
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- adams.core.logging.LoggingObject
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- adams.core.logging.CustomLoggingLevelObject
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- adams.core.option.AbstractOptionHandler
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- adams.flow.core.AbstractActor
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- adams.flow.transformer.AbstractTransformer
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- adams.flow.transformer.WekaGenericPLSMatrixAccess
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- All Implemented Interfaces:
AdditionalInformationHandler,CleanUpHandler,Destroyable,GlobalInfoSupporter,LoggingLevelHandler,LoggingSupporter,OptionHandler,QuickInfoSupporter,ShallowCopySupporter<Actor>,SizeOfHandler,Stoppable,StoppableWithFeedback,VariablesInspectionHandler,VariableChangeListener,Actor,ErrorHandler,InputConsumer,OutputProducer,Serializable,Comparable
public class WekaGenericPLSMatrixAccess extends AbstractTransformer
Transformer that allows the extraction of internal PLS filter/classifier matrices, forwarding them as spreadsheets.
See the respective PLS implementation for details on available matrix names (derived from: weka.filters.supervised.attribute.pls.AbstractPLS)
Input/output:
- accepts:
weka.classifiers.Classifier
weka.filters.Filter
weka.core.GenericPLSMatrixAccess
adams.flow.container.WekaModelContainer
- generates:
adams.data.spreadsheet.SpreadSheet
Container information:
- adams.flow.container.WekaModelContainer: Model, Header, Dataset
-logging-level <OFF|SEVERE|WARNING|INFO|CONFIG|FINE|FINER|FINEST> (property: loggingLevel) The logging level for outputting errors and debugging output. default: WARNING
-name <java.lang.String> (property: name) The name of the actor. default: WekaGenericPLSMatrixAccess
-annotation <adams.core.base.BaseAnnotation> (property: annotations) The annotations to attach to this actor. default:
-skip <boolean> (property: skip) If set to true, transformation is skipped and the input token is just forwarded as it is. default: false
-stop-flow-on-error <boolean> (property: stopFlowOnError) If set to true, the flow execution at this level gets stopped in case this actor encounters an error; the error gets propagated; useful for critical actors. default: false
-silent <boolean> (property: silent) If enabled, then no errors are output in the console; Note: the enclosing actor handler must have this enabled as well. default: false
-matrix <java.lang.String> (property: matrix) The name of matrix to extract. default: P
- Author:
- fracpete (fracpete at waikato dot ac dot nz)
- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description protected Stringm_Matrixthe name of the matrix to extract.-
Fields inherited from class adams.flow.transformer.AbstractTransformer
BACKUP_INPUT, BACKUP_OUTPUT, m_InputToken, m_OutputToken
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Fields inherited from class adams.flow.core.AbstractActor
m_Annotations, m_BackupState, m_DetectedObjectVariables, m_DetectedVariables, m_ErrorHandler, m_Executed, m_Executing, m_ExecutionListeningSupporter, m_FullName, m_LoggingPrefix, m_Name, m_Parent, m_ScopeHandler, m_Self, m_Silent, m_Skip, m_StopFlowOnError, m_StopMessage, m_Stopped, m_StorageHandler, m_VariablesUpdated
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Fields inherited from class adams.core.option.AbstractOptionHandler
m_OptionManager
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Fields inherited from class adams.core.logging.LoggingObject
m_Logger, m_LoggingIsEnabled, m_LoggingLevel
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Fields inherited from interface adams.flow.core.Actor
FILE_EXTENSION, FILE_EXTENSION_GZ
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Constructor Summary
Constructors Constructor Description WekaGenericPLSMatrixAccess()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Class[]accepts()Returns the class that the consumer accepts.voiddefineOptions()Adds options to the internal list of options.protected StringdoExecute()Executes the flow item.Class[]generates()Returns the class of objects that it generates.StringgetMatrix()Returns the name of matrix to extract.protected SpreadSheetgetMatrix(weka.classifiers.Classifier classifier)Returns the spreadsheet representation of the chosen from the classifier.protected SpreadSheetgetMatrix(GenericPLSMatrixAccess obj)Returns the spreadsheet representation of the chosen from the classifier/filter.StringgetQuickInfo()Returns a quick info about the actor, which will be displayed in the GUI.StringglobalInfo()Returns a string describing the object.StringmatrixTipText()Returns the tip text for this property.voidsetMatrix(String value)Sets the name of matrix to extract.-
Methods inherited from class adams.flow.transformer.AbstractTransformer
backupState, currentInput, execute, hasInput, hasPendingOutput, input, output, postExecute, restoreState, wrapUp
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Methods inherited from class adams.flow.core.AbstractActor
annotationsTipText, canInspectOptions, canPerformSetUpCheck, cleanUp, compareTo, configureLogger, destroy, equals, finalUpdateVariables, findVariables, findVariables, forceVariables, forCommandLine, forName, forName, getAdditionalInformation, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowActors, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, handleException, hasErrorHandler, hasStopMessage, index, initialize, isBackedUp, isExecuted, isExecuting, isFinished, isHeadless, isStopped, nameTipText, performSetUpChecks, performVariableChecks, preExecute, pruneBackup, pruneBackup, reset, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, silentTipText, sizeOf, skipTipText, stopExecution, stopExecution, stopFlowOnErrorTipText, updateDetectedVariables, updatePrefix, updateVariables, variableChanged
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Methods inherited from class adams.core.option.AbstractOptionHandler
cleanUpOptions, finishInit, getDefaultLoggingLevel, getOptionManager, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString
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Methods inherited from class adams.core.logging.LoggingObject
getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled
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Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface adams.flow.core.Actor
cleanUp, compareTo, destroy, equals, findVariables, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, hasErrorHandler, hasStopMessage, index, isExecuted, isFinished, isHeadless, isStopped, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, sizeOf, stopExecution, stopExecution, toCommandLine, variableChanged
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Methods inherited from interface adams.core.AdditionalInformationHandler
getAdditionalInformation
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Methods inherited from interface adams.core.logging.LoggingLevelHandler
getLoggingLevel, setLoggingLevel
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Methods inherited from interface adams.core.logging.LoggingSupporter
getLogger, isLoggingEnabled
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Methods inherited from interface adams.core.option.OptionHandler
cleanUpOptions, getOptionManager
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Methods inherited from interface adams.core.VariablesInspectionHandler
canInspectOptions
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Field Detail
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m_Matrix
protected String m_Matrix
the name of the matrix to extract.
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Method Detail
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globalInfo
public String globalInfo()
Returns a string describing the object.- Specified by:
globalInfoin interfaceGlobalInfoSupporter- Specified by:
globalInfoin classAbstractOptionHandler- Returns:
- a description suitable for displaying in the gui
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defineOptions
public void defineOptions()
Adds options to the internal list of options.- Specified by:
defineOptionsin interfaceOptionHandler- Overrides:
defineOptionsin classAbstractActor
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setMatrix
public void setMatrix(String value)
Sets the name of matrix to extract.- Parameters:
value- the name
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getMatrix
public String getMatrix()
Returns the name of matrix to extract.- Returns:
- the name
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matrixTipText
public String matrixTipText()
Returns the tip text for this property.- Returns:
- tip text for this property suitable for displaying in the GUI or for listing the options.
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getQuickInfo
public String getQuickInfo()
Returns a quick info about the actor, which will be displayed in the GUI.- Specified by:
getQuickInfoin interfaceActor- Specified by:
getQuickInfoin interfaceQuickInfoSupporter- Overrides:
getQuickInfoin classAbstractActor- Returns:
- null if no info available, otherwise short string
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accepts
public Class[] accepts()
Returns the class that the consumer accepts.- Returns:
- the Class of objects that can be processed
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generates
public Class[] generates()
Returns the class of objects that it generates.- Returns:
- the Class of the generated tokens
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getMatrix
protected SpreadSheet getMatrix(weka.classifiers.Classifier classifier)
Returns the spreadsheet representation of the chosen from the classifier.- Parameters:
classifier- the classifier to extract the matrix from- Returns:
- the generated spreadsheet, null if matrix not available
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getMatrix
protected SpreadSheet getMatrix(GenericPLSMatrixAccess obj)
Returns the spreadsheet representation of the chosen from the classifier/filter.- Parameters:
obj- the classifier/filter to extract the matrix from- Returns:
- the generated spreadsheet, null if matrix not available
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doExecute
protected String doExecute()
Executes the flow item.- Specified by:
doExecutein classAbstractActor- Returns:
- null if everything is fine, otherwise error message
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