Package weka.filters.unsupervised.attribute

Class LogTransform

  • All Implemented Interfaces:
    Serializable, weka.core.CapabilitiesHandler, weka.core.CapabilitiesIgnorer, weka.core.CommandlineRunnable, weka.core.OptionHandler, weka.core.RevisionHandler, weka.filters.StreamableFilter, weka.filters.UnsupervisedFilter
    public class LogTransform
extends weka.filters.SimpleStreamFilter
implements weka.filters.UnsupervisedFilter
    Transforms all numeric attributes in the specified range using a log-transform.
    The class attribute is omitted.
    If a value less or equal to zero is encountered, a missing value is output.

    Valid options are: 

     -output-debug-info
  If set, filter is run in debug mode and
  may output additional info to the console
     -do-not-check-capabilities
  If set, filter capabilities are not checked when input format is set
  (use with caution).
     -R <range specification>
  The range of attributes to process.
  (default: first-last)
     -add-one
  Whether to add '1' to the values before transform.
  Useful when dealing with counts, avoiding 0 counts.
  (default: off)
    Version:
    $Revision: 4521 $
    Author:
    fracpete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected boolean m_AddOne
      If true output nominal, false output numeric .
      protected weka.core.Range m_AttributeRange
      the range of attributes to log-transform.

      • Fields inherited from class weka.filters.Filter

        m_Debug, m_DoNotCheckCapabilities, m_FirstBatchDone, m_InputRelAtts, m_InputStringAtts, m_NewBatch, m_OutputRelAtts, m_OutputStringAtts

    • Constructor Summary

      Constructors 
      Constructor Description
      LogTransform()  

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      String addOneTipText()
      Returns the tip text for this property.
      String attributeRangeTipText()
      Returns the tip text for this property.
      protected weka.core.Instances determineOutputFormat​(weka.core.Instances inputFormat)
      Determines the output format based on the input format and returns this.
      boolean getAddOne()
      Returns whether to add '1' to the values before log-transform.
      String getAttributeRange()
      Returns the range of attributes to process.
      weka.core.Capabilities getCapabilities()
      Returns the Capabilities of this filter.
      String[] getOptions()
      Gets the current settings of the filter.
      String getRevision()
      Returns the revision string.
      String globalInfo()
      Returns a string describing this classifier.
      Enumeration listOptions()
      Returns an enumeration describing the available options.
      static void main​(String[] args)
      Main method for testing this class.
      protected weka.core.Instance process​(weka.core.Instance instance)
      processes the given instance (may change the provided instance) and returns the modified version.
      void setAddOne​(boolean value)
      Sets whether to add '1' to the values before log-transform.
      void setAttributeRange​(String value)
      Sets the range of attributes to process.
      void setOptions​(String[] options)
      Parses a list of options for this object.

      • Methods inherited from class weka.filters.SimpleStreamFilter

        batchFinished, hasImmediateOutputFormat, input, preprocess, process

      • Methods inherited from class weka.filters.SimpleFilter

        reset, setInputFormat

      • Methods inherited from class weka.filters.Filter

        batchFilterFile, bufferInput, copyValues, copyValues, debugTipText, doNotCheckCapabilitiesTipText, filterFile, flushInput, getCapabilities, getCopyOfInputFormat, getDebug, getDoNotCheckCapabilities, getInputFormat, getOutputFormat, initInputLocators, initOutputLocators, inputFormatPeek, isFirstBatchDone, isNewBatch, isOutputFormatDefined, makeCopies, makeCopy, mayRemoveInstanceAfterFirstBatchDone, numPendingOutput, output, outputFormatPeek, outputPeek, postExecution, preExecution, push, push, resetQueue, run, runFilter, setDebug, setDoNotCheckCapabilities, setOutputFormat, testInputFormat, toString, useFilter, wekaStaticWrapper

    • Field Detail

      • m_AttributeRange

        protected weka.core.Range m_AttributeRange
        the range of attributes to log-transform.

      • m_AddOne

        protected boolean m_AddOne
        If true output nominal, false output numeric .

    • Constructor Detail

      • LogTransform

        public LogTransform()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing this classifier.
        Specified by:
        globalInfo in class weka.filters.SimpleFilter
        Returns:
        a description of the classifier suitable for displaying in the explorer/experimenter gui

      • listOptions

        public Enumeration listOptions()
        Returns an enumeration describing the available options.
        Specified by:
        listOptions in interface weka.core.OptionHandler
        Overrides:
        listOptions in class weka.filters.Filter
        Returns:
        an enumeration of all the available options.

      • setOptions

        public void setOptions​(String[] options)
                throws Exception
        Parses a list of options for this object. Also resets the state of the filter (this reset doesn't affect the options).
        Specified by:
        setOptions in interface weka.core.OptionHandler
        Overrides:
        setOptions in class weka.filters.Filter
        Parameters:
        options - the list of options as an array of strings
        Throws:
        Exception - if an option is not supported
        See Also:
        SimpleFilter.reset()

      • getOptions

        public String[] getOptions()
        Gets the current settings of the filter.
        Specified by:
        getOptions in interface weka.core.OptionHandler
        Overrides:
        getOptions in class weka.filters.Filter
        Returns:
        an array of strings suitable for passing to setOptions

      • setAttributeRange

        public void setAttributeRange​(String value)
        Sets the range of attributes to process.
        Parameters:
        value - the attribute range

      • getAttributeRange

        public String getAttributeRange()
        Returns the range of attributes to process.
        Returns:
        the attribute range

      • attributeRangeTipText

        public String attributeRangeTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • setAddOne

        public void setAddOne​(boolean value)
        Sets whether to add '1' to the values before log-transform.
        Parameters:
        value - true if to add '1'

      • getAddOne

        public boolean getAddOne()
        Returns whether to add '1' to the values before log-transform.
        Returns:
        true if '1' added

      • addOneTipText

        public String addOneTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the explorer/experimenter gui

      • getCapabilities

        public weka.core.Capabilities getCapabilities()
        Returns the Capabilities of this filter. Derived filters have to override this method to enable capabilities.
        Specified by:
        getCapabilities in interface weka.core.CapabilitiesHandler
        Overrides:
        getCapabilities in class weka.filters.Filter
        Returns:
        the capabilities of this object
        See Also:
        Capabilities

      • determineOutputFormat

        protected weka.core.Instances determineOutputFormat​(weka.core.Instances inputFormat)
                                             throws Exception
        Determines the output format based on the input format and returns this. In case the output format cannot be returned immediately, i.e., hasImmediateOutputFormat() returns false, then this method will called from batchFinished() after the call of preprocess(Instances), in which, e.g., statistics for the actual processing step can be gathered.
        Specified by:
        determineOutputFormat in class weka.filters.SimpleStreamFilter
        Parameters:
        inputFormat - the input format to base the output format on
        Returns:
        the output format
        Throws:
        Exception - in case the determination goes wrong

      • process

        protected weka.core.Instance process​(weka.core.Instance instance)
                              throws Exception
        processes the given instance (may change the provided instance) and returns the modified version.
        Specified by:
        process in class weka.filters.SimpleStreamFilter
        Parameters:
        instance - the instance to process
        Returns:
        the modified data
        Throws:
        Exception - in case the processing goes wrong

      • getRevision

        public String getRevision()
        Returns the revision string.
        Specified by:
        getRevision in interface weka.core.RevisionHandler
        Overrides:
        getRevision in class weka.filters.Filter
        Returns:
        the revision

      • main

        public static void main​(String[] args)
        Main method for testing this class.
        Parameters:
        args - should contain arguments to the filter: use -h for help