Package adams.flow.sink

Class WekaThresholdCurve

  • All Implemented Interfaces:
    adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.QuickInfoSupporter, adams.core.ShallowCopySupporter<adams.flow.core.Actor>, adams.core.SizeOfHandler, adams.core.Stoppable, adams.core.StoppableWithFeedback, adams.core.VariablesInspectionHandler, adams.event.VariableChangeListener, adams.flow.core.Actor, adams.flow.core.ClearableDisplay, adams.flow.core.DisplayTypeSupporter, adams.flow.core.ErrorHandler, adams.flow.core.InputConsumer, adams.flow.sink.ComponentSupplier, adams.flow.sink.DisplayPanelProvider, adams.gui.core.MenuBarProvider, adams.gui.sendto.SendToActionSupporter, Serializable, Comparable
    public class WekaThresholdCurve
extends adams.flow.sink.AbstractGraphicalDisplay
implements adams.flow.sink.DisplayPanelProvider
    Actor for displaying threshold curves, like ROC or precision/recall.

    Input/output:
    - accepts:
       weka.classifiers.Evaluation
       adams.flow.container.WekaEvaluationContainer


    Container information:
    - adams.flow.container.WekaEvaluationContainer: Evaluation, Model 

    -logging-level <OFF|SEVERE|WARNING|INFO|CONFIG|FINE|FINER|FINEST> (property: loggingLevel)
    The logging level for outputting errors and debugging output.
    default: WARNING
 
    -name <java.lang.String> (property: name)
    The name of the actor.
    default: WekaThresholdCurve
 
    -annotation <adams.core.base.BaseAnnotation> (property: annotations)
    The annotations to attach to this actor.
    default: 
 
    -skip <boolean> (property: skip)
    If set to true, transformation is skipped and the input token is just forwarded 
    as it is.
    default: false
 
    -stop-flow-on-error <boolean> (property: stopFlowOnError)
    If set to true, the flow gets stopped in case this actor encounters an error;
     useful for critical actors.
    default: false
 
    -short-title <boolean> (property: shortTitle)
    If enabled uses just the name for the title instead of the actor's full 
    name.
    default: false
 
    -width <int> (property: width)
    The width of the dialog.
    default: 640
    minimum: -1
 
    -height <int> (property: height)
    The height of the dialog.
    default: 480
    minimum: -1
 
    -x <int> (property: x)
    The X position of the dialog (>=0: absolute, -1: left, -2: center, -3: right
    ).
    default: -1
    minimum: -3
 
    -y <int> (property: y)
    The Y position of the dialog (>=0: absolute, -1: top, -2: center, -3: bottom
    ).
    default: -1
    minimum: -3
 
    -writer <adams.gui.print.JComponentWriter> (property: writer)
    The writer to use for generating the graphics output.
    default: adams.gui.print.NullWriter
 
    -index <adams.core.Range> (property: classLabelRange)
    The indices of the class labels to use for the plot.
    default: first
    example: A range is a comma-separated list of single 1-based indices or sub-ranges of indices ('start-end'); 'inv(...)' inverts the range '...'; the following placeholders can be used as well: first, second, third, last_2, last_1, last
 
    -attribute-x <TRUE_POS|FALSE_NEG|FALSE_POS|TRUE_NEG|FP_RATE|TP_RATE|PRECISION|RECALL|FALLOUT|FMEASURE|SAMPLE_SIZE|LIFT|THRESHOLD> (property: attributeX)
    The attribute to show on the X axis.
    default: FP_RATE
 
    -attribute-y <TRUE_POS|FALSE_NEG|FALSE_POS|TRUE_NEG|FP_RATE|TP_RATE|PRECISION|RECALL|FALLOUT|FMEASURE|SAMPLE_SIZE|LIFT|THRESHOLD> (property: attributeY)
    The attribute to show on the Y axis.
    default: TP_RATE
    Author:
    fracpete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected WekaThresholdCurve.AttributeName m_AttributeX
      the attribute on the X axis.
      protected WekaThresholdCurve.AttributeName m_AttributeY
      the attribute on the Y axis.
      protected WekaLabelRange m_ClassLabelRange
      the class label indices.
      protected weka.gui.visualize.ThresholdVisualizePanel m_VisualizePanel
      the text area.

      • Fields inherited from class adams.flow.sink.AbstractGraphicalDisplay

        m_GraphicFileChooser, m_MenuBar, m_MenuItemFileClear, m_MenuItemFileClose, m_MenuItemFileSaveAs, m_MenuItemFileSaveTextAs, m_MenuItemFlowPauseResume, m_MenuItemFlowStop, m_ShowFlowControlSubMenu, m_TextFileChooser, m_Writer

      • Fields inherited from class adams.flow.core.AbstractDisplay

        BACKUP_INPUT, m_CreateFrame, m_DisplayType, m_Frame, m_Height, m_InputToken, m_KeepOpen, m_Panel, m_ShortTitle, m_Updating, m_Width, m_X, m_Y

      • Fields inherited from class adams.flow.core.AbstractActor

        m_Annotations, m_BackupState, m_DetectedObjectVariables, m_DetectedVariables, m_ErrorHandler, m_Executed, m_Executing, m_ExecutionListeningSupporter, m_FullName, m_LoggingPrefix, m_Name, m_Parent, m_ScopeHandler, m_Self, m_Silent, m_Skip, m_StopFlowOnError, m_StopMessage, m_Stopped, m_StorageHandler, m_VariablesUpdated

      • Fields inherited from class adams.core.option.AbstractOptionHandler

        m_OptionManager

      • Fields inherited from class adams.core.logging.LoggingObject

        m_Logger, m_LoggingIsEnabled, m_LoggingLevel

      • Fields inherited from interface adams.flow.core.Actor

        FILE_EXTENSION, FILE_EXTENSION_GZ

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Class[] accepts()
      Returns the class that the consumer accepts.
      String attributeXTipText()
      Returns the tip text for this property.
      String attributeYTipText()
      Returns the tip text for this property.
      String classLabelRangeTipText()
      Returns the tip text for this property.
      protected void cleanUpGUI()
      Removes all graphical components.
      void clearPanel()
      Clears the content of the panel.
      adams.flow.sink.AbstractDisplayPanel createDisplayPanel​(adams.flow.core.Token token)
      Creates a new panel for the token.
      void defineOptions()
      Adds options to the internal list of options.
      protected void display​(adams.flow.core.Token token)
      Plots the token (the panel and dialog have already been created at this stage).
      boolean displayPanelRequiresScrollPane()
      Returns whether the created display panel requires a scroll pane or not.
      WekaThresholdCurve.AttributeName getAttributeX()
      Returns the attribute to show on the X axis.
      WekaThresholdCurve.AttributeName getAttributeY()
      Returns the attribute to show on the Y axis.
      WekaLabelRange getClassLabelRange()
      Returns the class label indices.
      protected int getDefaultHeight()
      Returns the default height for the dialog.
      protected int getDefaultWidth()
      Returns the default width for the dialog.
      protected weka.classifiers.Evaluation getEvaluation​(adams.flow.core.Token token)
      Returns the Evaluation object from the token.
      String getQuickInfo()
      Returns a quick info about the actor, which will be displayed in the GUI.
      String globalInfo()
      Returns a string describing the object.
      protected void initialize()
      Initializes the members.
      protected adams.gui.core.BasePanel newPanel()
      Creates the panel to display in the dialog.
      void setAttributeX​(WekaThresholdCurve.AttributeName value)
      Sets the attribute to show on the X axis.
      void setAttributeY​(WekaThresholdCurve.AttributeName value)
      Sets the attribute to show on the Y axis.
      void setClassLabelRange​(WekaLabelRange value)
      Sets the class label indices.
      boolean supportsClear()
      Whether "clear" is supported and shows up in the menu.

      • Methods inherited from class adams.flow.sink.AbstractGraphicalDisplay

        canPauseOrResume, clear, close, createMenuBar, getGraphicFileChooser, getMenuBar, getSendToClasses, getSendToItem, getShowFlowControlSubMenu, getTextFileChooser, getWriter, hasPanel, hasSendToItem, isPaused, pauseResumeFlow, saveAs, saveTextAs, setShowFlowControlSubMenu, setWriter, showFlowControlSubMenuTipText, stopFlow, supplyComponent, updateMenu, wrapUp, writerTipText

      • Methods inherited from class adams.flow.sink.AbstractDisplay

        newDisplayRunnable, postDisplay, preDisplay

      • Methods inherited from class adams.flow.core.AbstractDisplay

        backupState, cleanUp, cleanUpGUIKeepOpen, closeFrame, createFrame, createTitle, currentInput, deregisterInWrapUp, deregisterWindow, deregisterWithEditor, displayTypeTipText, doCreateFrame, doExecute, getCreateFrame, getDefaultDisplayType, getDefaultShortTitle, getDefaultX, getDefaultY, getDisplayType, getFrame, getFrameDefaultCloseOperation, getHeight, getKeepOpen, getPanel, getShortTitle, getWidth, getX, getY, hasInput, heightTipText, input, postCreateFrame, preCreateFrame, registerWindow, registerWithEditor, reset, restoreState, setCreateFrame, setDisplayType, setHeight, setKeepOpen, setShortTitle, setWidth, setX, setY, shortTitleTipText, stopExecution, widthTipText, xTipText, yTipText

      • Methods inherited from class adams.flow.core.AbstractActor

        annotationsTipText, canInspectOptions, canPerformSetUpCheck, compareTo, configureLogger, destroy, equals, execute, finalUpdateVariables, findVariables, findVariables, forceVariables, forCommandLine, forName, forName, getAdditionalInformation, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowActors, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, handleException, hasErrorHandler, hasStopMessage, index, isBackedUp, isExecuted, isExecuting, isFinished, isHeadless, isStopped, nameTipText, performSetUpChecks, performVariableChecks, postExecute, preExecute, pruneBackup, pruneBackup, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, silentTipText, sizeOf, skipTipText, stopExecution, stopFlowOnErrorTipText, updateDetectedVariables, updatePrefix, updateVariables, variableChanged

      • Methods inherited from class adams.core.option.AbstractOptionHandler

        cleanUpOptions, finishInit, getDefaultLoggingLevel, getOptionManager, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString

      • Methods inherited from class adams.core.logging.LoggingObject

        getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled

      • Methods inherited from interface adams.flow.core.Actor

        cleanUp, compareTo, destroy, equals, execute, findVariables, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, hasErrorHandler, hasStopMessage, index, isExecuted, isFinished, isHeadless, isStopped, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, sizeOf, stopExecution, stopExecution, toCommandLine, variableChanged, wrapUp

      • Methods inherited from interface adams.core.AdditionalInformationHandler

        getAdditionalInformation

      • Methods inherited from interface adams.flow.core.InputConsumer

        currentInput, hasInput, input

      • Methods inherited from interface adams.core.logging.LoggingLevelHandler

        getLoggingLevel, setLoggingLevel

      • Methods inherited from interface adams.core.logging.LoggingSupporter

        getLogger, isLoggingEnabled

      • Methods inherited from interface adams.core.option.OptionHandler

        cleanUpOptions, getOptionManager

      • Methods inherited from interface adams.core.VariablesInspectionHandler

        canInspectOptions

    • Constructor Detail

      • WekaThresholdCurve

        public WekaThresholdCurve()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing the object.
        Specified by:
        globalInfo in interface adams.core.GlobalInfoSupporter
        Specified by:
        globalInfo in class adams.core.option.AbstractOptionHandler
        Returns:
        a description suitable for displaying in the gui

      • defineOptions

        public void defineOptions()
        Adds options to the internal list of options.
        Specified by:
        defineOptions in interface adams.core.option.OptionHandler
        Overrides:
        defineOptions in class adams.flow.sink.AbstractGraphicalDisplay

      • initialize

        protected void initialize()
        Initializes the members.
        Overrides:
        initialize in class adams.flow.core.AbstractDisplay

      • getDefaultWidth

        protected int getDefaultWidth()
        Returns the default width for the dialog.
        Overrides:
        getDefaultWidth in class adams.flow.core.AbstractDisplay
        Returns:
        the default width

      • getDefaultHeight

        protected int getDefaultHeight()
        Returns the default height for the dialog.
        Overrides:
        getDefaultHeight in class adams.flow.core.AbstractDisplay
        Returns:
        the default height

      • setClassLabelRange

        public void setClassLabelRange​(WekaLabelRange value)
        Sets the class label indices.
        Parameters:
        value - the range

      • getClassLabelRange

        public WekaLabelRange getClassLabelRange()
        Returns the class label indices.
        Returns:
        the range

      • classLabelRangeTipText

        public String classLabelRangeTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • setAttributeX

        public void setAttributeX​(WekaThresholdCurve.AttributeName value)
        Sets the attribute to show on the X axis.
        Parameters:
        value - the attribute

      • attributeXTipText

        public String attributeXTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • setAttributeY

        public void setAttributeY​(WekaThresholdCurve.AttributeName value)
        Sets the attribute to show on the Y axis.
        Parameters:
        value - the attribute

      • attributeYTipText

        public String attributeYTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • getQuickInfo

        public String getQuickInfo()
        Returns a quick info about the actor, which will be displayed in the GUI.
        Specified by:
        getQuickInfo in interface adams.flow.core.Actor
        Specified by:
        getQuickInfo in interface adams.core.QuickInfoSupporter
        Overrides:
        getQuickInfo in class adams.flow.core.AbstractDisplay
        Returns:
        null if no info available, otherwise short string

      • supportsClear

        public boolean supportsClear()
        Whether "clear" is supported and shows up in the menu.
        Specified by:
        supportsClear in interface adams.flow.core.ClearableDisplay
        Overrides:
        supportsClear in class adams.flow.sink.AbstractGraphicalDisplay
        Returns:
        true if supported

      • clearPanel

        public void clearPanel()
        Clears the content of the panel.
        Specified by:
        clearPanel in class adams.flow.core.AbstractDisplay

      • newPanel

        protected adams.gui.core.BasePanel newPanel()
        Creates the panel to display in the dialog.
        Specified by:
        newPanel in class adams.flow.core.AbstractDisplay
        Returns:
        the panel

      • accepts

        public Class[] accepts()
        Returns the class that the consumer accepts.
        Specified by:
        accepts in interface adams.flow.core.InputConsumer
        Returns:
        weka.classifiers.Evaluation.class, adams.flow.container.WekaEvaluationContainer.class

      • display

        protected void display​(adams.flow.core.Token token)
        Plots the token (the panel and dialog have already been created at this stage).
        Specified by:
        display in class adams.flow.sink.AbstractDisplay
        Parameters:
        token - the token to display

      • cleanUpGUI

        protected void cleanUpGUI()
        Removes all graphical components.
        Overrides:
        cleanUpGUI in class adams.flow.sink.AbstractGraphicalDisplay

      • getEvaluation

        protected weka.classifiers.Evaluation getEvaluation​(adams.flow.core.Token token)
        Returns the Evaluation object from the token.
        Parameters:
        token - the token to extract the Evaluation object from
        Returns:
        the Evaluation object

      • createDisplayPanel

        public adams.flow.sink.AbstractDisplayPanel createDisplayPanel​(adams.flow.core.Token token)
        Creates a new panel for the token.
        Specified by:
        createDisplayPanel in interface adams.flow.sink.DisplayPanelProvider
        Parameters:
        token - the token to display in a new panel, can be null
        Returns:
        the generated panel

      • displayPanelRequiresScrollPane

        public boolean displayPanelRequiresScrollPane()
        Returns whether the created display panel requires a scroll pane or not.
        Specified by:
        displayPanelRequiresScrollPane in interface adams.flow.sink.DisplayPanelProvider
        Returns:
        true if the display panel requires a scroll pane