Package adams.data.statistics

Class L1PointStatistic

java.lang.Object

adams.core.logging.LoggingObject

adams.data.statistics.AbstractDataStatistic<L1Point>

adams.data.statistics.L1PointStatistic

All Implemented Interfaces:

adams.core.CleanUpHandler, adams.core.logging.LoggingSupporter, adams.core.SizeOfHandler, adams.data.spreadsheet.SpreadSheetSupporter, adams.data.statistics.InformativeStatistic, Serializable

public class L1PointStatistic
extends adams.data.statistics.AbstractDataStatistic<L1Point>

A Level 1 point specific statistic.

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static String	KEY_DBID	the key for the database ID.
static String	KEY_MAX_X	the key for max x.
static String	KEY_MAX_Y	the key for max y.
static String	KEY_MEAN_X	the key for mean x.
static String	KEY_MEAN_Y	the key for mean y.
static String	KEY_MEDIAN_X	the key for median x.
static String	KEY_MEDIAN_Y	the key for median y.
static String	KEY_MIN_X	the key for min x.
static String	KEY_MIN_Y	the key for min y.
static String	KEY_NUM_LEVEL2	the key for number of MS points.
static String	KEY_X	the key for the timestamp.
static String	KEY_Y	the key for abundance.

Fields inherited from class adams.data.statistics.AbstractDataStatistic

m_Calculated, m_Data, m_Names, m_Statistics

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
L1PointStatistic()	Initializes the statistic.
L1PointStatistic(L1Point data)	Initializes the statistic.

Method Summary

Modifier and Type	Method	Description
protected void	calculate()	calculates the statistics.
void	cleanUp()	Cleans up data structures, frees up memory.
String	getStatisticDescription()	Returns a description for this statistic, i.e., chromatgram ID and timestamp.
String	globalInfo()	Returns a string describing the object.

Methods inherited from class adams.data.statistics.AbstractDataStatistic

add, clear, getData, getStatistic, numberToDouble, setData, statisticNames, toSpreadSheet, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

KEY_DBID

public static final String KEY_DBID

the key for the database ID.

See Also:

Constant Field Values

KEY_Y

public static final String KEY_Y

the key for abundance.

See Also:

Constant Field Values

KEY_X

public static final String KEY_X

the key for the timestamp.

See Also:

Constant Field Values

KEY_NUM_LEVEL2

public static final String KEY_NUM_LEVEL2

the key for number of MS points.

See Also:

Constant Field Values

KEY_MIN_X

public static final String KEY_MIN_X

the key for min x.

See Also:

Constant Field Values

KEY_MAX_X

public static final String KEY_MAX_X

the key for max x.

See Also:

Constant Field Values

KEY_MEAN_X

public static final String KEY_MEAN_X

the key for mean x.

See Also:

Constant Field Values

KEY_MEDIAN_X

public static final String KEY_MEDIAN_X

the key for median x.

See Also:

Constant Field Values

KEY_MIN_Y

public static final String KEY_MIN_Y

the key for min y.

See Also:

Constant Field Values

KEY_MAX_Y

public static final String KEY_MAX_Y

the key for max y.

See Also:

Constant Field Values

KEY_MEAN_Y

public static final String KEY_MEAN_Y

the key for mean y.

See Also:

Constant Field Values

KEY_MEDIAN_Y

public static final String KEY_MEDIAN_Y

the key for median y.

See Also:

Constant Field Values

Constructor Detail

L1PointStatistic

public L1PointStatistic()

Initializes the statistic.

L1PointStatistic

public L1PointStatistic(L1Point data)

Initializes the statistic.

Parameters:

data - the gc point to generate the statistics for

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in class adams.data.statistics.AbstractDataStatistic<L1Point>

Returns:

a description suitable for displaying in the gui

cleanUp

public void cleanUp()

Cleans up data structures, frees up memory.

Specified by:

cleanUp in interface adams.core.CleanUpHandler

Overrides:

cleanUp in class adams.data.statistics.AbstractDataStatistic<L1Point>

getStatisticDescription

public String getStatisticDescription()

Returns a description for this statistic, i.e., chromatgram ID and timestamp.

Returns:

the description

calculate

protected void calculate()

calculates the statistics.

Overrides:

calculate in class adams.data.statistics.AbstractDataStatistic<L1Point>