adams.gui.visualization.heatmap
Class HeatmapViewerPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  adams.gui.core.BasePanel
                      adams.gui.visualization.heatmap.HeatmapViewerPanel

All Implemented Interfaces:

StatusMessageHandler, MenuBarProvider, FilterListener<Heatmap>, SendToActionSupporter, ImageObserver, MenuContainer, Serializable, Accessible

public class HeatmapViewerPanel
extends BasePanel
implements MenuBarProvider, StatusMessageHandler, FilterListener<Heatmap>, SendToActionSupporter

Panel for viewing/processing heatmaps.

Version:

$Revision: 6167 $

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

protected AbstractFilter<Heatmap>	m_CurrentFilter the current filter.
protected FilterDialog	m_DialogFilter the filter dialog.
protected HeatmapFileChooser	m_FileChooser for loading heatmaps from disk.
protected boolean	m_FilterAll indicates whether filter is applied to all heatmaps.
protected boolean	m_FilterOverlayOriginalData indicates whether the filtered data was overlayed over the original.
protected JMenuBar	m_MenuBar the menu bar.
protected JMenuItem	m_MenuItemFileCloseAll the "close all" menu item.
protected JMenuItem	m_MenuItemFileCloseCurrent the "close current" menu item.
protected JMenuItem	m_MenuItemFileReloadAll the "reload all" menu item.
protected JMenuItem	m_MenuItemFileReloadCurrent the "reload current" menu item.
protected JMenuItem	m_MenuItemFileSaveAs the "save as" menu item.
protected JMenuItem	m_MenuItemProcessApplyImageJ the ImageJ menu item.
protected JMenuItem	m_MenuItemProcessApplyImageMagick the ImageMagick menu item.
protected JMenuItem	m_MenuItemProcessApplyJAI the JAI menu item.
protected JMenuItem	m_MenuItemProcessFilterAllHeatmaps the filter all menu item.
protected JMenuItem	m_MenuItemProcessFilterHeatmap the filter menu item.
protected JMenuItem	m_MenuItemViewShowCentroid the show centroid menu item.
protected JMenuItem	m_MenuItemViewShowNotes the show notes menu item.
protected JMenuItem	m_MenuItemViewShowSpreadsheet the show spreadhseet menu item.
protected JMenuItem	m_MenuItemViewShowStatistics the show statistics menu item.
protected static Properties	m_Properties the setup for the panel.
protected SearchPanel	m_SearchPanel the search panel for the heatmap report.
protected BaseStatusBar	m_StatusBar the status bar.
protected BaseTabbedPane	m_TabbedPane the tabbed pane for the heatmaps.
static String	SESSION_FILE the file to store the recent files in.

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

HeatmapViewerPanel()

Method Summary

protected void	applyImageFilter(HeatmapPanel panel, AbstractImageFilter filter) Applies the image filter to the heatmap image.
protected void	applyImageJ(HeatmapPanel panel) Applies ImageJ to the heatmap images.
protected void	applyImageMagick(HeatmapPanel panel) Applies ImageMagick to the heatmap images.
protected void	applyJAI(HeatmapPanel panel) Applies JAI to the heatmap images.
void	close() closes the dialog/frame.
void	closeAll() Removes all the data.
void	closeCurrent() Removes the current tab.
protected void	filter() pops up GOE dialog for filter.
void	filter(FilterEvent<Heatmap> e) Filters the data.
HeatmapPanel	getCurrentPanel() Returns the currently selected heatmap panel.
JMenuBar	getMenuBar() Creates a menu bar (singleton per panel object).
HeatmapPanel	getPanelAt(int index) Returns the specified heatmap panel.
Properties	getProperties() Returns the properties for this panel.
Class[]	getSendToClasses() Returns the classes that the supporter generates.
Object	getSendToItem(Class[] cls) Returns the object to send.
boolean	hasSendToItem(Class[] cls) Checks whether something to send is available.
protected void	initGUI() Initializes the widgets.
protected void	initialize() Initializes the members.
void	load() Loads heatmaps from disk, popping up a file chooser dialog.
void	load(File file) Loads the specified file from disk.
void	load(File[] files, AbstractHeatmapReader reader) Loads heatmaps from disk, popping up a file chooser dialog.
protected HeatmapPanel	newPanel(Heatmap map) Creates a new panel and configures it.
protected void	reloadAll() Reloads all heatmaps.
protected void	reloadCurrent() Reloads the current panel's heatmap.
protected void	saveAs() Saves the current heatmap to disk.
void	search(String text, boolean isRegExp) Performs a search.
void	showStatus(String msg) Displays a message.
protected void	updateMenu() updates the enabled state of the menu items.

Methods inherited from class adams.gui.core.BasePanel

afterHide, afterShow, beforeHide, beforeShow, closeParent, finishInit, getParentChild, getParentDialog, getParentFrame, getParentInternalFrame, getParentTitle, main, setParentTitle, setVisible

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SESSION_FILE

public static final String SESSION_FILE

the file to store the recent files in.

See Also:

Constant Field Values

m_Properties

protected static Properties m_Properties

the setup for the panel.

m_TabbedPane

protected BaseTabbedPane m_TabbedPane

the tabbed pane for the heatmaps.

m_StatusBar

protected BaseStatusBar m_StatusBar

the status bar.

m_MenuBar

protected JMenuBar m_MenuBar

the menu bar.

m_MenuItemFileReloadCurrent

protected JMenuItem m_MenuItemFileReloadCurrent

the "reload current" menu item.

m_MenuItemFileReloadAll

protected JMenuItem m_MenuItemFileReloadAll

the "reload all" menu item.

m_MenuItemFileSaveAs

protected JMenuItem m_MenuItemFileSaveAs

the "save as" menu item.

m_MenuItemFileCloseCurrent

protected JMenuItem m_MenuItemFileCloseCurrent

the "close current" menu item.

m_MenuItemFileCloseAll

protected JMenuItem m_MenuItemFileCloseAll

the "close all" menu item.

m_MenuItemProcessFilterHeatmap

protected JMenuItem m_MenuItemProcessFilterHeatmap

the filter menu item.

m_MenuItemProcessFilterAllHeatmaps

protected JMenuItem m_MenuItemProcessFilterAllHeatmaps

the filter all menu item.

m_MenuItemProcessApplyImageJ

protected JMenuItem m_MenuItemProcessApplyImageJ

the ImageJ menu item.

m_MenuItemProcessApplyJAI

protected JMenuItem m_MenuItemProcessApplyJAI

the JAI menu item.

m_MenuItemProcessApplyImageMagick

protected JMenuItem m_MenuItemProcessApplyImageMagick

the ImageMagick menu item.

m_MenuItemViewShowCentroid

protected JMenuItem m_MenuItemViewShowCentroid

the show centroid menu item.

m_MenuItemViewShowSpreadsheet

protected JMenuItem m_MenuItemViewShowSpreadsheet

the show spreadhseet menu item.

m_MenuItemViewShowStatistics

protected JMenuItem m_MenuItemViewShowStatistics

the show statistics menu item.

m_MenuItemViewShowNotes

protected JMenuItem m_MenuItemViewShowNotes

the show notes menu item.

m_FileChooser

protected HeatmapFileChooser m_FileChooser

for loading heatmaps from disk.

m_CurrentFilter

protected AbstractFilter<Heatmap> m_CurrentFilter

the current filter.

m_DialogFilter

protected FilterDialog m_DialogFilter

the filter dialog.

m_FilterOverlayOriginalData

protected boolean m_FilterOverlayOriginalData

indicates whether the filtered data was overlayed over the original.

m_FilterAll

protected boolean m_FilterAll

indicates whether filter is applied to all heatmaps.

m_SearchPanel

protected SearchPanel m_SearchPanel

the search panel for the heatmap report.

Constructor Detail

HeatmapViewerPanel

public HeatmapViewerPanel()

Method Detail

initialize

protected void initialize()

Initializes the members.

Overrides:

initialize in class BasePanel

initGUI

protected void initGUI()

Initializes the widgets.

Overrides:

initGUI in class BasePanel

getMenuBar

public JMenuBar getMenuBar()

Creates a menu bar (singleton per panel object). Can be used in frames.

Specified by:

getMenuBar in interface MenuBarProvider

Returns:

the menu bar

getPanelAt

public HeatmapPanel getPanelAt(int index)

Returns the specified heatmap panel.

Parameters:

index - the index of the panel

Returns:

the panel, null if invalid index

getCurrentPanel

public HeatmapPanel getCurrentPanel()

Returns the currently selected heatmap panel.

Returns:

the panel, null if none selected

updateMenu

protected void updateMenu()

updates the enabled state of the menu items.

reloadCurrent

protected void reloadCurrent()

Reloads the current panel's heatmap.

reloadAll

protected void reloadAll()

Reloads all heatmaps.

closeCurrent

public void closeCurrent()

Removes the current tab.

closeAll

public void closeAll()

Removes all the data.

newPanel

protected HeatmapPanel newPanel(Heatmap map)

Creates a new panel and configures it.

Parameters:

map - the map to create the panel for

Returns:

the panel

load

public void load(File[] files,
                 AbstractHeatmapReader reader)

Loads heatmaps from disk, popping up a file chooser dialog.

load

public void load(File file)

Loads the specified file from disk. If no reader can be determined, the

load

public void load()

Loads heatmaps from disk, popping up a file chooser dialog.

saveAs

protected void saveAs()

Saves the current heatmap to disk.

close

public void close()

closes the dialog/frame.

filter

protected void filter()

pops up GOE dialog for filter.

filter

public void filter(FilterEvent<Heatmap> e)

Filters the data.

Specified by:

filter in interface FilterListener<Heatmap>

Parameters:

e - the event

applyImageFilter

protected void applyImageFilter(HeatmapPanel panel,
                                AbstractImageFilter filter)

Applies the image filter to the heatmap image.

Parameters:

panel - the panel's image to process

filter - the image filter to apply

applyImageJ

protected void applyImageJ(HeatmapPanel panel)

Applies ImageJ to the heatmap images.

Parameters:

panel - the heatmap image to process

applyJAI

protected void applyJAI(HeatmapPanel panel)

Applies JAI to the heatmap images.

Parameters:

panel - the heatmap image to process

applyImageMagick

protected void applyImageMagick(HeatmapPanel panel)

Applies ImageMagick to the heatmap images.

Parameters:

panel - the heatmap image to process

search

public void search(String text,
                   boolean isRegExp)

Performs a search.

Parameters:

text - the search text

isRegExp - whether the search text is a regular expression

showStatus

public void showStatus(String msg)

Displays a message.

Specified by:

showStatus in interface StatusMessageHandler

Parameters:

msg - the message to display

getSendToClasses

public Class[] getSendToClasses()

Returns the classes that the supporter generates.

Specified by:

getSendToClasses in interface SendToActionSupporter

Returns:

the classes

hasSendToItem

public boolean hasSendToItem(Class[] cls)

Checks whether something to send is available.

Specified by:

hasSendToItem in interface SendToActionSupporter

Parameters:

cls - the classes to retrieve an item for

Returns:

true if an object is available for sending

getSendToItem

public Object getSendToItem(Class[] cls)

Returns the object to send.

Specified by:

getSendToItem in interface SendToActionSupporter

Parameters:

cls - the classes to retrieve the item for

Returns:

the item to send

getProperties

public Properties getProperties()

Returns the properties for this panel.

Returns:

the properties file for this panel