adams.data.imagej.flattener
Class Pixels

java.lang.Object
  adams.core.ConsoleObject
      adams.core.option.AbstractOptionHandler
          adams.data.image.AbstractImageFlattener<ImagePlusContainer>
              adams.data.imagej.flattener.AbstractImageJFlattener
                  adams.data.imagej.flattener.Pixels

All Implemented Interfaces:

CleanUpHandler, Debuggable, Destroyable, OptionHandler, SizeOfHandler, Serializable, Comparable

public class Pixels
extends AbstractImageJFlattener

Gets all the pixels of the image.

Valid options are:

-D <int> (property: debugLevel)
    The greater the number the more additional info the scheme may output to 
    the console (0 = off).
    default: 0
    minimum: 0
 

-field <adams.data.report.Field> [-field ...] (property: fields)
    The fields to add to the output.
    default: 
 

-notes <adams.core.base.BaseString> [-notes ...] (property: notes)
    The notes to add as attributes to the generated data, eg 'PROCESS INFORMATION'
    .
    default: 
 

Version:

$Revision: 4779 $

Author:

fracpete (fracpete at waikato dot ac dot nz), Dale (dale at cs dot waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.data.image.AbstractImageFlattener

m_Fields, m_Header, m_Notes

Fields inherited from class adams.core.option.AbstractOptionHandler

m_DebugLevel, m_OptionManager

Constructor Summary

Pixels()

Method Summary

Instances	createHeader(ImagePlusContainer img) Creates the header from a template image.
Instance[]	doFlatten(ImagePlusContainer img) Performs the actual flattening of the image.
String	globalInfo() Returns a string describing the object.

Methods inherited from class adams.data.imagej.flattener.AbstractImageJFlattener

forCommandLine, forName, getFlatteners

Methods inherited from class adams.data.image.AbstractImageFlattener

checkImage, cleanUp, compareTo, defineOptions, destroy, equals, fieldsTipText, flatten, getFields, getNotes, newArray, notesTipText, postProcessHeader, postProcessInstance, reset, setFields, setNotes, shallowCopy, shallowCopy

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, debug, debug, debugLevelTipText, finishInit, getDebugLevel, getOptionManager, initialize, isDebugOn, newOptionManager, setDebugLevel, toCommandLine, toString

Methods inherited from class adams.core.ConsoleObject

getDebugging, getSystemErr, getSystemOut, sizeOf

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Pixels

public Pixels()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in class AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

createHeader

public Instances createHeader(ImagePlusContainer img)

Creates the header from a template image.

Specified by:

createHeader in class AbstractImageFlattener<ImagePlusContainer>

Parameters:

img - the image to act as a template

Returns:

the generated header

doFlatten

public Instance[] doFlatten(ImagePlusContainer img)

Performs the actual flattening of the image.

Specified by:

doFlatten in class AbstractImageFlattener<ImagePlusContainer>

Parameters:

img - the image to process

Returns:

the generated array

See Also:

AbstractImageFlattener.m_Header