adams.data.imagej.transformer
Class AbstractImageJTransformer

java.lang.Object
  adams.core.ConsoleObject
      adams.core.option.AbstractOptionHandler
          adams.data.image.AbstractImageTransformer<ImagePlusContainer>
              adams.data.imagej.transformer.AbstractImageJTransformer

All Implemented Interfaces:

CleanUpHandler, Debuggable, Destroyable, OptionHandler, SizeOfHandler, Serializable, Comparable

Direct Known Subclasses:

Command, Gray8, Macro, NamedSetup, PassThrough, PlugInFilter, Resize

public abstract class AbstractImageJTransformer
extends AbstractImageTransformer<ImagePlusContainer>

Abstract base class for ImageJ transformations. Derived classes only have to override the doProcess(ImagePlus) method. The reset() method can be used to reset an algorithms internal state, e.g., after setting options.

Version:

$Revision: 4753 $

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.core.option.AbstractOptionHandler

m_DebugLevel, m_OptionManager

Constructor Summary

AbstractImageJTransformer()

Method Summary

static AbstractImageJTransformer	forCommandLine(String cmdline) Instantiates the transformation from the given commandline (i.e., classname and optional options).
static AbstractImageJTransformer	forName(String classname, String[] options) Instantiates the transformation with the given options.
static String[]	getTransformations() Returns a list with classnames of transformations.

Methods inherited from class adams.data.image.AbstractImageTransformer

checkImage, cleanUp, compareTo, destroy, doTransform, equals, shallowCopy, shallowCopy, transform

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, debug, debug, debugLevelTipText, defineOptions, finishInit, getDebugLevel, getOptionManager, globalInfo, initialize, isDebugOn, newOptionManager, reset, setDebugLevel, toCommandLine, toString

Methods inherited from class adams.core.ConsoleObject

getDebugging, getSystemErr, getSystemOut, sizeOf

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AbstractImageJTransformer

public AbstractImageJTransformer()

Method Detail

getTransformations

public static String[] getTransformations()

Returns a list with classnames of transformations.

Returns:

the transformation classnames

forName

public static AbstractImageJTransformer forName(String classname,
                                                String[] options)

Instantiates the transformation with the given options.

Parameters:

classname - the classname of the transformation to instantiate

options - the options for the transformation

Returns:

the instantiated transformation or null if an error occurred

forCommandLine

public static AbstractImageJTransformer forCommandLine(String cmdline)

Instantiates the transformation from the given commandline (i.e., classname and optional options).

Parameters:

cmdline - the classname (and optional options) of the transformation to instantiate

Returns:

the instantiated transformation or null if an error occurred