adams.data.imagej.transformer
Class PlugInFilter

java.lang.Object
  adams.core.ConsoleObject
      adams.core.option.AbstractOptionHandler
          adams.data.image.AbstractImageTransformer<ImagePlusContainer>
              adams.data.imagej.transformer.AbstractImageJTransformer
                  adams.data.imagej.transformer.PlugInFilter

All Implemented Interfaces:

CleanUpHandler, Debuggable, Destroyable, OptionHandler, SizeOfHandler, Serializable, Comparable

public class PlugInFilter
extends AbstractImageJTransformer

A transformer that allows the use of ImageJ's plug-in filters.
Notes:
- the filter must implement 'ij.plugin.filter.PlugInFilter'
- the filter can pop-up a window to enter additional parameters,
the first time it is executed, depending on the filter implementation
(you can suppress this with supplying the options manually)
- the manual options string can be obtained when recording macros
in ImageJ
- the filter must be in the classpath of the application

Valid options are:

-D <int> (property: debugLevel)
    The greater the number the more additional info the scheme may output to
    the console (0 = off).
    default: 0
    minimum: 0
 

-filter <java.lang.String> (property: plugInFilter)
    The classname of the plug-in filter to use.
    default: ij.plugin.filter.FFTFilter
 

-suppress-plugin-dialog (property: suppressPlugInDialog)
    If enabled, the plugin dialog is suppressed using the supplied plugin options.
 

-plugin-options <java.lang.String> (property: plugInOptions)
    The options for the plug-in if the dialog gets suppressed.
    default:
 

Version:

$Revision: 4753 $

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

protected ij.plugin.filter.PlugInFilter	m_ActualFilter the actual filter.
protected String	m_PlugInFilter the classname of the plugin-filter.
protected String	m_PlugInOptions the options for the plugin (if dialog suppressed).
protected boolean	m_SuppressPlugInDialog whether to suppress the plugin dialog.

Fields inherited from class adams.core.option.AbstractOptionHandler

m_DebugLevel, m_OptionManager

Constructor Summary

PlugInFilter()

Method Summary

void	cleanUp() Cleans up data structures, frees up memory.
void	defineOptions() Adds options to the internal list of options.
protected ImagePlusContainer[]	doTransform(ImagePlusContainer img) Performs no transformation at all, just returns the input.
protected ij.plugin.filter.PlugInFilter	getFilter(ImagePlusContainer img) Returns the filter to use.
String	getPlugInFilter() Returns the classname of the plugin filter in use.
String	getPlugInOptions() Returns the options for the plug-in if the dialog gets suppressed.
boolean	getSuppressPlugInDialog() Returns whether to suppress the plugin dialog.
String	globalInfo() Returns a string describing the object.
String	plugInFilterTipText() Returns the tip text for this property.
String	plugInOptionsTipText() Returns the tip text for this property.
protected void	reset() Resets the scheme.
void	setPlugInFilter(String value) Sets the classname of the plugin filter to use.
void	setPlugInOptions(String value) Sets the options for the plug-in if the dialog gets suppressed.
void	setSuppressPlugInDialog(boolean value) Sets whether to suppress the plugin dialog.
String	suppressPlugInDialogTipText() Returns the tip text for this property.

Methods inherited from class adams.data.imagej.transformer.AbstractImageJTransformer

forCommandLine, forName, getTransformations

Methods inherited from class adams.data.image.AbstractImageTransformer

checkImage, compareTo, destroy, equals, shallowCopy, shallowCopy, transform

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, debug, debug, debugLevelTipText, finishInit, getDebugLevel, getOptionManager, initialize, isDebugOn, newOptionManager, setDebugLevel, toCommandLine, toString

Methods inherited from class adams.core.ConsoleObject

getDebugging, getSystemErr, getSystemOut, sizeOf

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

m_PlugInFilter

protected String m_PlugInFilter

the classname of the plugin-filter.

m_ActualFilter

protected ij.plugin.filter.PlugInFilter m_ActualFilter

the actual filter.

m_SuppressPlugInDialog

protected boolean m_SuppressPlugInDialog

whether to suppress the plugin dialog.

m_PlugInOptions

protected String m_PlugInOptions

the options for the plugin (if dialog suppressed).

Constructor Detail

PlugInFilter

public PlugInFilter()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in class AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

defineOptions

public void defineOptions()

Adds options to the internal list of options.

Specified by:

defineOptions in interface OptionHandler

Overrides:

defineOptions in class AbstractOptionHandler

reset

protected void reset()

Resets the scheme.

Overrides:

reset in class AbstractOptionHandler

setPlugInFilter

public void setPlugInFilter(String value)

Sets the classname of the plugin filter to use.

Parameters:

value - the classname

getPlugInFilter

public String getPlugInFilter()

Returns the classname of the plugin filter in use.

Returns:

the classname

plugInFilterTipText

public String plugInFilterTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setSuppressPlugInDialog

public void setSuppressPlugInDialog(boolean value)

Sets whether to suppress the plugin dialog.

Parameters:

value - true if to suppress the dialog

getSuppressPlugInDialog

public boolean getSuppressPlugInDialog()

Returns whether to suppress the plugin dialog.

Returns:

true if the dialog is suppressed

suppressPlugInDialogTipText

public String suppressPlugInDialogTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setPlugInOptions

public void setPlugInOptions(String value)

Sets the options for the plug-in if the dialog gets suppressed.

Parameters:

value - the options

getPlugInOptions

public String getPlugInOptions()

Returns the options for the plug-in if the dialog gets suppressed.

Returns:

the options

plugInOptionsTipText

public String plugInOptionsTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

getFilter

protected ij.plugin.filter.PlugInFilter getFilter(ImagePlusContainer img)

Returns the filter to use.

Parameters:

img - the image used for setting up

Returns:

the filter

doTransform

protected ImagePlusContainer[] doTransform(ImagePlusContainer img)

Performs no transformation at all, just returns the input.

Automating an ImageJ dialog taken from here.

Specified by:

doTransform in class AbstractImageTransformer<ImagePlusContainer>

Parameters:

img - the image to process (can be modified, since it is a copy)

Returns:

the copy of the image

cleanUp

public void cleanUp()

Cleans up data structures, frees up memory.

Specified by:

cleanUp in interface CleanUpHandler

Overrides:

cleanUp in class AbstractImageTransformer<ImagePlusContainer>