Index (adams-imaging 0.4.0 API)

Overview

Package

Class

Use

Tree

Deprecated

Index

Help

PREV NEXT

FRAMES NO FRAMES

A B C D E F G H I J L M N O P R S T U V W X Y

A

AbstractColorProviderPixelSelectorOverlay - Class in adams.flow.transformer.pixelselector: Overlay that uses a color provider for the painting the various elements of the overlay.
AbstractColorProviderPixelSelectorOverlay() - Constructor for class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay
AbstractImageFlattener<T extends AbstractImage> - Class in adams.data.image: Abstract base class for AbstractImage flattening operations.
AbstractImageFlattener() - Constructor for class adams.data.image.AbstractImageFlattener
AbstractImageJFlattener - Class in adams.data.imagej.flattener: Abstract base class for ImageJ flattening operations.
AbstractImageJFlattener() - Constructor for class adams.data.imagej.flattener.AbstractImageJFlattener
AbstractImageJTransformer - Class in adams.data.imagej.transformer: Abstract base class for ImageJ transformations.
AbstractImageJTransformer() - Constructor for class adams.data.imagej.transformer.AbstractImageJTransformer
AbstractImageTransformer<T extends AbstractImage> - Class in adams.data.image: Abstract base class for AbstractImage transformations.
AbstractImageTransformer() - Constructor for class adams.data.image.AbstractImageTransformer
AbstractJAIFlattener - Class in adams.data.jai.flattener: Abstract base class for JAI flattening operations.
AbstractJAIFlattener() - Constructor for class adams.data.jai.flattener.AbstractJAIFlattener
AbstractJAITransformer - Class in adams.data.jai.transformer: Abstract base class for JAI transformations.
AbstractJAITransformer() - Constructor for class adams.data.jai.transformer.AbstractJAITransformer
AbstractPixelSelectorAction - Class in adams.flow.transformer.pixelselector: Ancestor for actions for the PixelSelector interactive transformer.
AbstractPixelSelectorAction() - Constructor for class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Initializes the object.
AbstractPixelSelectorOverlay - Class in adams.flow.transformer.pixelselector: Ancestor for overlays in the pixel selector GUI, making use of the data stored in the report.
AbstractPixelSelectorOverlay() - Constructor for class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay
AbstractSingleColorPixelSelectorOverlay - Class in adams.flow.transformer.pixelselector: Overlay that uses a single, user-defined color.
AbstractSingleColorPixelSelectorOverlay() - Constructor for class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay
accepts() - Method in class adams.data.conversion.BufferedImageToImageJ: Returns the class that is accepted as input.
accepts() - Method in class adams.data.conversion.ImageJToBufferedImage: Returns the class that is accepted as input.
accepts() - Method in class adams.flow.sink.ImageJWriter: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.sink.ImageMagickWriter: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.sink.JAIWriter: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageInfo: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageJFlattener: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageJReader: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageJTransformer: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageMagickReader: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.ImageMagickTransformer: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.JAIFlattener: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.JAIReader: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.JAITransformer: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.PixelSelector: Returns the class that the consumer accepts.
accepts() - Method in class adams.flow.transformer.SetImagePixel: Returns the class that the consumer accepts.
actionPerformed(ActionEvent) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Invoked when an action occurs.
actionsTipText() - Method in class adams.flow.transformer.PixelSelector: Returns the tip text for this property.
adams.core - package adams.core
adams.data.conversion - package adams.data.conversion
adams.data.image - package adams.data.image
adams.data.imagej - package adams.data.imagej
adams.data.imagej.flattener - package adams.data.imagej.flattener
adams.data.imagej.transformer - package adams.data.imagej.transformer
adams.data.jai - package adams.data.jai
adams.data.jai.flattener - package adams.data.jai.flattener
adams.data.jai.transformer - package adams.data.jai.transformer
adams.flow.sink - package adams.flow.sink
adams.flow.source - package adams.flow.source
adams.flow.transformer - package adams.flow.transformer
adams.flow.transformer.pixelselector - package adams.flow.transformer.pixelselector
adams.gui.clipboard - package adams.gui.clipboard
adams.gui.menu - package adams.gui.menu
adams.gui.print - package adams.gui.print
adams.gui.visualization.image.plugins - package adams.gui.visualization.image.plugins
addActionListener(ActionListener) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Adds a listener for button actions.
AddClassification - Class in adams.flow.transformer.pixelselector: Allows the user to select a pixel location and add a corresponding classification for it.
Stores the location with prefix 'Pixel.X.' and 'Pixel.Y.' and the classification using 'Classification.' as prefix.
AddClassification() - Constructor for class adams.flow.transformer.pixelselector.AddClassification
addImageOverlay(ImageOverlay) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Adds the image overlay.
anchorTipText() - Method in class adams.data.jai.flattener.PixelClassifications: Returns the tip text for this property.
anchorTipText() - Method in class adams.data.jai.transformer.Crop: Returns the tip text for this property.
angleTipText() - Method in class adams.data.jai.transformer.Rotate: Returns the tip text for this property.
APPROVE_OPTION - Static variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the APPROVE option.

B

backgroundTipText() - Method in class adams.data.jai.transformer.Rotate: Returns the tip text for this property.
backgroundTipText() - Method in class adams.flow.source.JAICreateImage: Returns the tip text for this property.
BACKUP_CURRENTIMAGES - Static variable in class adams.flow.transformer.ImageJTransformer: the key for storing the current images in the backup.
BACKUP_CURRENTIMAGES - Static variable in class adams.flow.transformer.JAITransformer: the key for storing the current counter in the backup.
BACKUP_QUEUE - Static variable in class adams.flow.transformer.ImageJFlattener: the key for storing the current instances in the backup.
BACKUP_QUEUE - Static variable in class adams.flow.transformer.JAIFlattener: the key for storing the current instances in the backup.
backupState() - Method in class adams.flow.transformer.ImageJFlattener: Backs up the current state of the actor before update the variables.
backupState() - Method in class adams.flow.transformer.ImageJTransformer: Backs up the current state of the actor before update the variables.
backupState() - Method in class adams.flow.transformer.JAIFlattener: Backs up the current state of the actor before update the variables.
backupState() - Method in class adams.flow.transformer.JAITransformer: Backs up the current state of the actor before update the variables.
BottomRightCorner - Class in adams.flow.transformer.pixelselector: Allows the user to select a pixel location of the bottom-right corner.
Stores the location in 'Pixel.Right' and 'Pixel.Bottom'.
BottomRightCorner() - Constructor for class adams.flow.transformer.pixelselector.BottomRightCorner
BufferedImage - Class in adams.gui.clipboard: Copies/pastes buffered images.
BufferedImage() - Constructor for class adams.gui.clipboard.BufferedImage
BufferedImageContainer - Class in adams.data.jai: Image wrapper around a BufferedImage used by JAI.
BufferedImageContainer() - Constructor for class adams.data.jai.BufferedImageContainer
BufferedImageHelper - Class in adams.core: Helper class for BufferedImage objects.
BufferedImageHelper() - Constructor for class adams.core.BufferedImageHelper
BufferedImageToImageJ - Class in adams.data.conversion: Turns a BufferedImage container into an ImageJ one.
BufferedImageToImageJ() - Constructor for class adams.data.conversion.BufferedImageToImageJ

C

CANCEL_OPTION - Static variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel

the CANCEL option.

canExecute(ImagePanel) - Method in class adams.gui.visualization.image.plugins.ImageMagick

Checks whether the plugin can be executed given the specified image panel.

canPaste() - Method in class adams.gui.clipboard.BufferedImage

Checks whether the required data type is available from the clipboard.

check() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Performs a check on the setup.

check() - Method in class adams.flow.transformer.pixelselector.AddClassification

Performs a check on the setup.

checkImage(T) - Method in class adams.data.image.AbstractImageFlattener

Optional checks of the image.

checkImage(T) - Method in class adams.data.image.AbstractImageTransformer

Optional checks of the image.

clamp(int) - Method in class adams.data.jai.transformer.GaussianBlur

Clamp a value to the range 0..255

CLASSIFICATION - Static variable in class adams.flow.transformer.pixelselector.AddClassification

the classification prefix.

ClassificationOverlay - Class in adams.flow.transformer.pixelselector

Highlights the chosen classifications.

Some actions that generate data for this overlay:
adams.flow.transformer.pixelselector.AddClassification

Valid options are:

ClassificationOverlay() - Constructor for class adams.flow.transformer.pixelselector.ClassificationOverlay

cleanUp() - Method in class adams.data.image.AbstractImageFlattener

Cleans up data structures, frees up memory.

cleanUp() - Method in class adams.data.image.AbstractImageTransformer

Cleans up data structures, frees up memory.

cleanUp() - Method in class adams.data.imagej.transformer.Command

Cleans up data structures, frees up memory.

cleanUp() - Method in class adams.data.imagej.transformer.PlugInFilter

Cleans up data structures, frees up memory.

cleanUp() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Cleans up data structures, frees up memory.

cleanUpOptions() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Cleans up the options.

clearImageOverlays() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Removes all image overlays.

clearPanel() - Method in class adams.flow.transformer.PixelSelector

Clears the content of the panel.

cloneImage() - Method in class adams.data.imagej.ImagePlusContainer

Returns a clone of the image.

cloneImage() - Method in class adams.data.jai.BufferedImageContainer

Returns a clone of the image.

closeDialog(int) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Closes the dialog.

colorProviderTipText() - Method in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay

Returns the tip text for this property.

colorTipText() - Method in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay

Returns the tip text for this property.

colorTipText() - Method in class adams.flow.transformer.SetImagePixel

Returns the tip text for this property.

Command - Class in adams.data.imagej.transformer

A transformer that allows the execution of ImageJ commands.
Note(s):
- the options for the command can be obtained when recording macros
in ImageJ

Valid options are:

Command() - Constructor for class adams.data.imagej.transformer.Command

commandOptionsTipText() - Method in class adams.data.imagej.transformer.Command

Returns the tip text for this property.

commandsTipText() - Method in class adams.data.imagej.transformer.Macro

Returns the tip text for this property.

commandsTipText() - Method in class adams.flow.transformer.ImageMagickTransformer

Returns the tip text for this property.

commandTipText() - Method in class adams.data.imagej.transformer.Command

Returns the tip text for this property.

COMMENT - Static variable in class adams.flow.transformer.ImageMagickTransformer

the start of a line comment.

compareTo(Object) - Method in class adams.data.image.AbstractImageFlattener

Compares this object with the specified object for order.

compareTo(Object) - Method in class adams.data.image.AbstractImageTransformer

Compares this object with the specified object for order.

compressTipText() - Method in class adams.gui.print.TIFFWriter

Returns the tip text for this property.

convolveAndTranspose(Kernel, int[], int[], int, int) - Method in class adams.data.jai.transformer.GaussianBlur

Applies the kernel.

copy(BufferedImage) - Method in class adams.gui.clipboard.BufferedImage

Copies the data to the clipboard.

createHeader(T) - Method in class adams.data.image.AbstractImageFlattener

Creates the header from a template image.

createHeader(ImagePlusContainer) - Method in class adams.data.imagej.flattener.Histogram

Creates the header from a template image.

createHeader(ImagePlusContainer) - Method in class adams.data.imagej.flattener.NamedSetup

Creates the header from a template image.

createHeader(ImagePlusContainer) - Method in class adams.data.imagej.flattener.Pixels

Creates the header from a template image.

createHeader(BufferedImageContainer) - Method in class adams.data.jai.flattener.DFT

Creates the header from a template image.

createHeader(BufferedImageContainer) - Method in class adams.data.jai.flattener.Histogram

Creates the header from a template image.

createHeader(BufferedImageContainer) - Method in class adams.data.jai.flattener.NamedSetup

Creates the header from a template image.

createHeader(BufferedImageContainer) - Method in class adams.data.jai.flattener.PixelClassifications

Creates the header from a template image.

createHeader(BufferedImageContainer) - Method in class adams.data.jai.flattener.Pixels

Creates the header from a template image.

Crop - Class in adams.data.jai.transformer

Crops the image to specified width and height.

Crop() - Constructor for class adams.data.jai.transformer.Crop

Crop.Anchor - Enum in adams.data.jai.transformer

Enumeration for the crop rectangle anchor.\

D

deepCopy(BufferedImage) - Static method in class adams.core.BufferedImageHelper: Returns a copy of a BufferedImage object.
defineOptions() - Method in class adams.data.image.AbstractImageFlattener: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.flattener.Histogram: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.flattener.NamedSetup: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.transformer.Command: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.transformer.Macro: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.transformer.NamedSetup: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.transformer.PlugInFilter: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.imagej.transformer.Resize: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.flattener.Histogram: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.flattener.NamedSetup: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.flattener.PixelClassifications: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.flattener.Pixels: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.transformer.Crop: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.transformer.GaussianBlur: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.transformer.NamedSetup: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.transformer.Resize: Adds options to the internal list of options.
defineOptions() - Method in class adams.data.jai.transformer.Rotate: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.sink.ImageJWriter: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.sink.ImageMagickWriter: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.sink.JAIWriter: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.source.JAICreateImage: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.ImageInfo: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.ImageJFlattener: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.ImageJTransformer: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.ImageMagickTransformer: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.JAIFlattener: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.JAITransformer: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.pixelselector.AddClassification: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.PixelSelector: Adds options to the internal list of options.
defineOptions() - Method in class adams.flow.transformer.SetImagePixel: Adds options to the internal list of options.
defineOptions() - Method in class adams.gui.print.TIFFWriter: Adds options to the internal list of options.
destroy() - Method in class adams.data.image.AbstractImageFlattener: Frees up memory in a "destructive" non-reversible way.
destroy() - Method in class adams.data.image.AbstractImageTransformer: Frees up memory in a "destructive" non-reversible way.
destroy() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Frees up memory in a "destructive" non-reversible way.
determineImageType(String) - Method in class adams.flow.sink.ImageJWriter: Determines the image type for the given filename.
determineImageType(String) - Method in class adams.flow.sink.ImageMagickWriter: Determines the image type for the given filename.
determineImageType(String) - Method in class adams.flow.sink.JAIWriter: Determines the image type for the given filename.
DFT - Class in adams.data.jai.flattener: Performs discrete fourier transform (DFT).
DFT() - Constructor for class adams.data.jai.flattener.DFT
disableMediaLib() - Static method in class adams.core.JAIHelper: Disables the "java.lang.NoClassDefFoundError: com/sun/medialib/mlib/Image" exception.
doConvert() - Method in class adams.data.conversion.BufferedImageToImageJ: Performs the actual conversion.
doConvert() - Method in class adams.data.conversion.ImageJToBufferedImage: Performs the actual conversion.
doExecute() - Method in class adams.flow.sink.ImageJWriter: Executes the flow item.
doExecute() - Method in class adams.flow.sink.ImageMagickWriter: Executes the flow item.
doExecute() - Method in class adams.flow.sink.JAIWriter: Executes the flow item.
doExecute() - Method in class adams.flow.source.JAICreateImage: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageInfo: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageJFlattener: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageJReader: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageJTransformer: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageMagickReader: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.ImageMagickTransformer: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.JAIFlattener: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.JAIReader: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.JAITransformer: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.PixelSelector: Executes the flow item.
doExecute() - Method in class adams.flow.transformer.SetImagePixel: Executes the flow item.
doFlatten(T) - Method in class adams.data.image.AbstractImageFlattener: Performs the actual flattening of the image.
doFlatten(ImagePlusContainer) - Method in class adams.data.imagej.flattener.Histogram: Performs the actual flattening of the image.
doFlatten(ImagePlusContainer) - Method in class adams.data.imagej.flattener.NamedSetup: Performs the actual flattening of the image.
doFlatten(ImagePlusContainer) - Method in class adams.data.imagej.flattener.Pixels: Performs the actual flattening of the image.
doFlatten(BufferedImageContainer) - Method in class adams.data.jai.flattener.DFT: Performs the actual flattening of the image.
doFlatten(BufferedImageContainer) - Method in class adams.data.jai.flattener.Histogram: Performs the actual flattening of the image.
doFlatten(BufferedImageContainer) - Method in class adams.data.jai.flattener.NamedSetup: Performs the actual flattening of the image.
doFlatten(BufferedImageContainer) - Method in class adams.data.jai.flattener.PixelClassifications: Performs the actual flattening of the image.
doFlatten(BufferedImageContainer) - Method in class adams.data.jai.flattener.Pixels: Performs the actual flattening of the image.
doInteract() - Method in class adams.flow.transformer.PixelSelector: Performs the interaction with the user.
doPaintOverlay(ImagePanel.PaintPanel, Graphics) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay: Paints the actual overlay over the image.
doPaintOverlay(ImagePanel.PaintPanel, Graphics) - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay: Paints the actual overlay over the image.
doPaintOverlay(ImagePanel.PaintPanel, Graphics) - Method in class adams.flow.transformer.pixelselector.RectangleOverlay: Paints the actual overlay over the image.
doPaintOverlay(ImagePanel.PaintPanel, Graphics) - Method in class adams.flow.transformer.pixelselector.SimpleOverlay: Paints the actual overlay over the image.
doProcessAction(ActionEvent) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Reacts to the action event.
doProcessAction(ActionEvent) - Method in class adams.flow.transformer.pixelselector.AddClassification: Reacts to the action event.
doProcessAction(ActionEvent) - Method in class adams.flow.transformer.pixelselector.BottomRightCorner: Reacts to the action event.
doProcessAction(ActionEvent) - Method in class adams.flow.transformer.pixelselector.SimpleSelect: Reacts to the action event.
doProcessAction(ActionEvent) - Method in class adams.flow.transformer.pixelselector.TopLeftCorner: Reacts to the action event.
doTransform(T) - Method in class adams.data.image.AbstractImageTransformer: Performs the actual transforming of the image.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.Command: Performs no transformation at all, just returns the input.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.Gray8: Performs no transformation at all, just returns the input.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.Macro: Performs no transformation at all, just returns the input.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.NamedSetup: Performs the transformation.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.PassThrough: Performs no transformation at all, just returns the input.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.PlugInFilter: Performs no transformation at all, just returns the input.
doTransform(ImagePlusContainer) - Method in class adams.data.imagej.transformer.Resize: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.Crop: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.GaussianBlur: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.Gray8: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.NamedSetup: Performs the transformation.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.PassThrough: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.Resize: Performs no transformation at all, just returns the input.
doTransform(BufferedImageContainer) - Method in class adams.data.jai.transformer.Rotate: Performs no transformation at all, just returns the input.

E

editOverlays() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Edits the current overlays.
ENV_PATH - Static variable in class adams.core.ImageMagickHelper: the environment variable to check.
equals(Object) - Method in class adams.data.image.AbstractImageFlattener: Returns whether the two objects are the same.
equals(Object) - Method in class adams.data.image.AbstractImageTransformer: Returns whether the two objects are the same.

F

fieldsTipText() - Method in class adams.data.image.AbstractImageFlattener: Returns the tip text for this property.
filter(BufferedImage) - Method in class adams.gui.visualization.image.plugins.ImageJTransformer: Filters the image.
filter(BufferedImage) - Method in class adams.gui.visualization.image.plugins.ImageMagick: Filters the image.
filter(BufferedImage) - Method in class adams.gui.visualization.image.plugins.JAITransformer: Filters the image.
finishInit() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Finishes the initialization in the constructor.
flatten(T) - Method in class adams.data.image.AbstractImageFlattener: Process the given image.
flattenAlgorithmTipText() - Method in class adams.flow.transformer.ImageJFlattener: Returns the tip text for this property.
flattenAlgorithmTipText() - Method in class adams.flow.transformer.JAIFlattener: Returns the tip text for this property.
forCommandLine(String) - Static method in class adams.data.imagej.flattener.AbstractImageJFlattener: Instantiates the transformation from the given commandline (i.e., classname and optional options).
forCommandLine(String) - Static method in class adams.data.imagej.transformer.AbstractImageJTransformer: Instantiates the transformation from the given commandline (i.e., classname and optional options).
forCommandLine(String) - Static method in class adams.data.jai.flattener.AbstractJAIFlattener: Instantiates the transformation from the given commandline (i.e., classname and optional options).
forCommandLine(String) - Static method in class adams.data.jai.transformer.AbstractJAITransformer: Instantiates the transformation from the given commandline (i.e., classname and optional options).
forName(String, String[]) - Static method in class adams.data.imagej.flattener.AbstractImageJFlattener: Instantiates the transformation with the given options.
forName(String, String[]) - Static method in class adams.data.imagej.transformer.AbstractImageJTransformer: Instantiates the transformation with the given options.
forName(String, String[]) - Static method in class adams.data.jai.flattener.AbstractJAIFlattener: Instantiates the transformation with the given options.
forName(String, String[]) - Static method in class adams.data.jai.transformer.AbstractJAITransformer: Instantiates the transformation with the given options.

G

GaussianBlur - Class in adams.data.jai.transformer

Performs a gaussian blur.
Original code taken from here:
http://www.jhlabs.com/ip/blurring.html

Valid options are:

GaussianBlur() - Constructor for class adams.data.jai.transformer.GaussianBlur

generateOutput() - Method in class adams.gui.print.TIFFWriter

generates the actual output.

generates() - Method in class adams.data.conversion.BufferedImageToImageJ

Returns the class that is generated as output.

generates() - Method in class adams.data.conversion.ImageJToBufferedImage

Returns the class that is generated as output.

generates() - Method in class adams.flow.source.JAICreateImage

Returns a string describing the object.

generates() - Method in class adams.flow.transformer.ImageInfo

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.ImageJFlattener

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.ImageJReader

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.ImageJTransformer

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.ImageMagickReader

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.ImageMagickTransformer

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.JAIFlattener

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.JAIReader

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.JAITransformer

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.PixelSelector

Returns the class of objects that it generates.

generates() - Method in class adams.flow.transformer.SetImagePixel

Returns the class of objects that it generates.

getActions() - Method in class adams.flow.transformer.PixelSelector

Returns the available popup actions.

getActions() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Returns the available popup actions.

getActualScheme() - Method in class adams.data.imagej.flattener.NamedSetup

Returns the named setup.

getActualScheme() - Method in class adams.data.imagej.transformer.NamedSetup

Returns the named setup.

getActualScheme() - Method in class adams.data.jai.flattener.NamedSetup

Returns the named setup.

getActualScheme() - Method in class adams.data.jai.transformer.NamedSetup

Returns the named setup.

getAnchor() - Method in class adams.data.jai.flattener.PixelClassifications

Returns where to anchor the position on the rectangle.

getAnchor() - Method in class adams.data.jai.transformer.Crop

Returns where to anchor the position on the rectangle.

getAngle() - Method in class adams.data.jai.transformer.Rotate

Returns the rotation angle.

getBackground() - Method in class adams.data.jai.transformer.Rotate

Returns the color in use for the background.

getBackground() - Method in class adams.flow.source.JAICreateImage

Returns the background color of the image.

getBottomRight() - Method in class adams.flow.transformer.pixelselector.RectangleOverlay

Returns the bottom-right corner to paint.

getCaption() - Method in class adams.gui.visualization.image.plugins.ImageJTransformer

Returns the text for the menu item to create.

getCaption() - Method in class adams.gui.visualization.image.plugins.ImageMagick

Returns the text for the menu item to create.

getCaption() - Method in class adams.gui.visualization.image.plugins.JAITransformer

Returns the text for the menu item to create.

getCategory() - Method in class adams.gui.menu.ImageJ

Returns the category of the menu item in which it should appear, i.e., the name of the menu.

getClassificationIndices(BufferedImageContainer) - Method in class adams.data.jai.flattener.PixelClassifications

Returns the classification indices.

getClassificationIndices() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns the classification indices.

getColor() - Method in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay

Returns the color for the overlay.

getColor() - Method in class adams.flow.transformer.SetImagePixel

Returns the color of the pixel.

getColorProvider() - Method in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay

Returns the color provider for the overlay.

getCommand() - Method in class adams.data.imagej.transformer.Command

Returns the command to execute.

getCommandOptions() - Method in class adams.data.imagej.transformer.Command

Returns the options for the command.

getCommands() - Method in class adams.data.imagej.transformer.Macro

Returns the width to resize to.

getCommands() - Method in class adams.flow.transformer.ImageMagickTransformer

Returns the commands in execute.

getCompress() - Method in class adams.gui.print.TIFFWriter

Returns whether to compress the image.

getCustomPopupMenu(MouseEvent) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Creates a popup menu for the given mouse event.

getDefaultBackground() - Method in class adams.flow.source.JAICreateImage

Returns the default backrgound color of the image.

getDefaultColor() - Method in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay

Returns the default color.

getDefaultColorProvider() - Method in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay

Returns the default color provider.

getDefaultHeight() - Method in class adams.flow.source.JAICreateImage

Returns the default height of the image.

getDefaultSplitterPosition() - Method in class adams.flow.transformer.PixelSelector

Returns the default position for the splitter.

getDefaultWidth() - Method in class adams.flow.source.JAICreateImage

Returns the default width of the image.

getDescription() - Method in class adams.gui.print.TIFFWriter

returns the name of the writer, to display in the FileChooser.

getExtension() - Method in enum adams.flow.sink.ImageMagickWriter.ImageType

Returns the associated extension.

getExtension() - Method in enum adams.flow.sink.JAIWriter.ImageType

Returns the associated extension.

getExtensions() - Method in class adams.gui.print.TIFFWriter

returns the extensions (incl.

getFields() - Method in class adams.data.image.AbstractImageFlattener

Returns the targets to add.

getFilter(ImagePlusContainer) - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the filter to use.

getFlattenAlgorithm() - Method in class adams.flow.transformer.ImageJFlattener

Returns the flattener in use.

getFlattenAlgorithm() - Method in class adams.flow.transformer.JAIFlattener

Returns the flattener in use.

getFlatteners() - Static method in class adams.data.imagej.flattener.AbstractImageJFlattener

Returns a list with classnames of transformations.

getFlatteners() - Static method in class adams.data.jai.flattener.AbstractJAIFlattener

Returns a list with classnames of transformations.

getFlowClass() - Method in class adams.gui.clipboard.BufferedImage

Returns the supported class.

getGlobalInfo() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns a string describing the object.

getGlobalInfo() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns a string describing the object.

getGlobalInfo() - Method in class adams.flow.transformer.pixelselector.RectangleOverlay

Returns a string describing the object.

getGlobalInfo() - Method in class adams.flow.transformer.pixelselector.SimpleOverlay

Returns a string describing the object.

getHeight() - Method in class adams.data.imagej.ImagePlusContainer

Returns the height of the image.

getHeight() - Method in class adams.data.imagej.transformer.Resize

Returns the height to resize to.

getHeight() - Method in class adams.data.jai.BufferedImageContainer

Returns the height of the image.

getHeight() - Method in class adams.data.jai.flattener.PixelClassifications

Returns the height of the crop rectangle.

getHeight() - Method in class adams.data.jai.transformer.Crop

Returns the height of the crop rectangle.

getHeight() - Method in class adams.data.jai.transformer.Resize

Returns the height to resize to.

getHeight() - Method in class adams.flow.source.JAICreateImage

Returns the height of the image.

getHistogramType() - Method in class adams.data.imagej.flattener.Histogram

Returns the type of histogram to generate.

getHistogramType() - Method in class adams.data.jai.flattener.Histogram

Returns the type of histogram to generate.

getIconName() - Method in class adams.gui.menu.ImageJ

Returns the file name of the icon.

getImage() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns the underlying image.

getImage() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Returns the current image.

getImageType() - Method in class adams.flow.sink.ImageJWriter

Returns the type of image to create.

getImageType() - Method in class adams.flow.sink.ImageMagickWriter

Returns the type of image to create.

getImageType() - Method in class adams.flow.sink.JAIWriter

Returns the type of image to create.

getInterpolation() - Method in class adams.data.jai.transformer.Rotate

Returns the type of interpolation to perform.

getInterpolationType() - Method in class adams.data.jai.transformer.Resize

Returns the type of interpolation in use.

getLabels() - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns the available classification labels.

getLastActionResult(Class) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Retrieves the previous result for the specified action if available.

getMenuBar() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Creates a menu bar (singleton per panel object).

getMissingCommandErrorMessage(String) - Static method in class adams.core.ImageMagickHelper

Returns a standard error message if specifiec command is not available.

getMissingConvertErrorMessage() - Static method in class adams.core.ImageMagickHelper

Returns a standard error message if "convert" is not available.

getMousePosition() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns the mouse position, if available.

getNextClassificationIndex(Report) - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns the next free classification index.

getNotes() - Method in class adams.data.image.AbstractImageFlattener

Returns the current notes to add as attributes.

getNumSubsampleBits() - Method in class adams.data.jai.transformer.Resize

Returns the precision for subsampling in bits.

getOptionManager() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns the option manager.

getOriginX() - Method in class adams.data.jai.transformer.Rotate

Returns the X of the origin.

getOriginY() - Method in class adams.data.jai.transformer.Rotate

Returns the Y of the origin.

getOverlays() - Method in class adams.flow.transformer.PixelSelector

Returns the available image overlays.

getPanel() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns the panel, if available.

getPixelLocation(BufferedImageContainer, int) - Method in class adams.data.jai.flattener.PixelClassifications

Returns the pixel location to paint.

getPixelLocation(int) - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns the pixel location to paint.

getPixelLocation() - Method in class adams.flow.transformer.pixelselector.SimpleOverlay

Returns the pixel location to paint.

getPixelPosition() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns the pixel position, if available.

getPixelRaster(BufferedImage) - Static method in class adams.core.BufferedImageHelper

Returns the pixels of the image as an 2-D int array (row-wise).

getPixels(BufferedImage) - Static method in class adams.core.BufferedImageHelper

Returns all the pixels of the image as an int array (row-wise).

getPlugInFilter() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the classname of the plugin filter in use.

getPlugInOptions() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the options for the plug-in if the dialog gets suppressed.

getQuickInfo() - Method in class adams.flow.sink.ImageJWriter

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.sink.ImageMagickWriter

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.sink.JAIWriter

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.source.JAICreateImage

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.ImageInfo

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.ImageJFlattener

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.ImageJTransformer

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.ImageMagickTransformer

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.JAIFlattener

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.JAITransformer

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.SetImagePixel

Returns a quick info about the actor, which will be displayed in the GUI.

getRadius() - Method in class adams.data.jai.transformer.GaussianBlur

Returns the blur radius.

getRememberLastSelection() - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns whether to remmeber the last selected label.

getResult() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Returns the current result.

getRGBA() - Method in class adams.flow.transformer.SetImagePixel

Returns the RGBA value of the pixel.

getRGBPixels(BufferedImage) - Static method in class adams.core.BufferedImageHelper

Returns all the pixels of the image as an int array (row-wise) with the RGB(A) components as second dimension.

getSeparateRGB() - Method in class adams.data.jai.flattener.PixelClassifications

Returns the setup name.

getSeparateRGB() - Method in class adams.data.jai.flattener.Pixels

Returns the setup name.

getSetup() - Method in class adams.data.imagej.flattener.NamedSetup

Returns the setup name.

getSetup() - Method in class adams.data.imagej.transformer.NamedSetup

Returns the setup name.

getSetup() - Method in class adams.data.jai.flattener.NamedSetup

Returns the setup name.

getSetup() - Method in class adams.data.jai.transformer.NamedSetup

Returns the setup name.

getShowIndex() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns whether the index is shown.

getShowLabel() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns whether the label is shown.

getSplitterPosition() - Method in class adams.flow.transformer.PixelSelector

Returns the initial position of the splitter in the viewer panel.

getSplitterPosition() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Returns the current location of the splitter/divider.

getSuggestedActions() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns some actions that generate data for this overlay.

getSuggestedActions() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns some actions that generate data for this overlay.

getSuggestedActions() - Method in class adams.flow.transformer.pixelselector.RectangleOverlay

Returns some actions that generate data for this overlay.

getSuggestedActions() - Method in class adams.flow.transformer.pixelselector.SimpleOverlay

Returns some actions that generate data for this overlay.

getSuppressPlugInDialog() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns whether to suppress the plugin dialog.

getTitle() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns the title of the action (used as menu item text).

getTitle() - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns the title of the action (used as menu item text).

getTitle() - Method in class adams.flow.transformer.pixelselector.BottomRightCorner

Returns the title of the action (used as menu item text).

getTitle() - Method in class adams.flow.transformer.pixelselector.SimpleSelect

Returns the title of the action (used as menu item text).

getTitle() - Method in class adams.flow.transformer.pixelselector.TopLeftCorner

Returns the title of the action (used as menu item text).

getTitle() - Method in class adams.gui.menu.ImageJ

Returns the title of the window (and text of menuitem).

getTopLeft() - Method in class adams.flow.transformer.pixelselector.RectangleOverlay

Returns the top-left corner to paint.

getTransformAlgorithm() - Method in class adams.flow.transformer.ImageJTransformer

Returns the transformer in use.

getTransformAlgorithm() - Method in class adams.flow.transformer.JAITransformer

Returns the transformer in use.

getTransformations() - Static method in class adams.data.imagej.transformer.AbstractImageJTransformer

Returns a list with classnames of transformations.

getTransformations() - Static method in class adams.data.jai.transformer.AbstractJAITransformer

Returns a list with classnames of transformations.

getType() - Method in enum adams.flow.sink.ImageMagickWriter.ImageType

Returns the ImageMagick type.

getType() - Method in enum adams.flow.sink.JAIWriter.ImageType

Returns the ImageMagick type.

getType() - Method in class adams.flow.transformer.ImageInfo

Returns the type of information to generate.

getType() - Method in class adams.flow.transformer.SetImagePixel

Returns the type of value to use.

getUserMode() - Method in class adams.gui.menu.ImageJ

Returns the user mode, which determines visibility as well.

getWidth() - Method in class adams.data.imagej.ImagePlusContainer

Returns the width of the image.

getWidth() - Method in class adams.data.imagej.transformer.Resize

Returns the width to resize to.

getWidth() - Method in class adams.data.jai.BufferedImageContainer

Returns the width of the image.

getWidth() - Method in class adams.data.jai.flattener.PixelClassifications

Returns the width of the crop rectangle.

getWidth() - Method in class adams.data.jai.transformer.Crop

Returns the width of the crop rectangle.

getWidth() - Method in class adams.data.jai.transformer.Resize

Returns the width to resize to.

getWidth() - Method in class adams.flow.source.JAICreateImage

Returns the width of the image.

getX() - Method in class adams.data.jai.transformer.Crop

Returns the X position.

getX() - Method in class adams.flow.transformer.SetImagePixel

Returns the X position of the pixel.

getY() - Method in class adams.data.jai.transformer.Crop

Returns the Y position.

getY() - Method in class adams.flow.transformer.SetImagePixel

Returns the X position of the pixel.

globalInfo() - Method in class adams.data.conversion.BufferedImageToImageJ

Returns a string describing the object.

globalInfo() - Method in class adams.data.conversion.ImageJToBufferedImage

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.flattener.Histogram

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.flattener.NamedSetup

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.flattener.Pixels

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.Command

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.Gray8

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.Macro

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.NamedSetup

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.PassThrough

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns a string describing the object.

globalInfo() - Method in class adams.data.imagej.transformer.Resize

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.flattener.DFT

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.flattener.Histogram

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.flattener.NamedSetup

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.flattener.PixelClassifications

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.flattener.Pixels

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.Crop

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.GaussianBlur

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.Gray8

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.NamedSetup

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.PassThrough

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.Resize

Returns a string describing the object.

globalInfo() - Method in class adams.data.jai.transformer.Rotate

Returns a string describing the object.

globalInfo() - Method in class adams.flow.sink.ImageJWriter

Returns a string describing the object.

globalInfo() - Method in class adams.flow.sink.ImageMagickWriter

Returns a string describing the object.

globalInfo() - Method in class adams.flow.sink.JAIWriter

Returns a string describing the object.

globalInfo() - Method in class adams.flow.source.JAICreateImage

globalInfo() - Method in class adams.flow.transformer.ImageInfo

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.ImageJFlattener

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.ImageJReader

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.ImageJTransformer

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.ImageMagickReader

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.ImageMagickTransformer

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.JAIFlattener

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.JAIReader

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.JAITransformer

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.BottomRightCorner

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.PixelSelector

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.SimpleSelect

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.pixelselector.TopLeftCorner

Returns a string describing the object.

globalInfo() - Method in class adams.flow.transformer.SetImagePixel

Returns a string describing the object.

globalInfo() - Method in class adams.gui.clipboard.BufferedImage

Returns a string describing the object.

globalInfo() - Method in class adams.gui.print.TIFFWriter

Returns a string describing the object.

Gray8 - Class in adams.data.imagej.transformer

Transforms the image into an 8-bit gray image.

Gray8() - Constructor for class adams.data.imagej.transformer.Gray8

Gray8 - Class in adams.data.jai.transformer

Transforms the image into an 8-bit gray image.

Gray8() - Constructor for class adams.data.jai.transformer.Gray8

H

hasImage() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Checks whether an image is currently displayed.
hasLastActionResult(Class) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Checks for the specified action whether a previous result is available.
hasMousePosition() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Checks whether a mouse position is available.
hasPanel() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Checks whether a panel is available.
hasPendingOutput() - Method in class adams.flow.source.JAICreateImage: Checks whether there is pending output to be collected after executing the flow item.
hasPendingOutput() - Method in class adams.flow.transformer.ImageJFlattener: Checks whether there is pending output to be collected after executing the flow item.
hasPendingOutput() - Method in class adams.flow.transformer.ImageJTransformer: Checks whether there is pending output to be collected after executing the flow item.
hasPendingOutput() - Method in class adams.flow.transformer.JAIFlattener: Checks whether there is pending output to be collected after executing the flow item.
hasPendingOutput() - Method in class adams.flow.transformer.JAITransformer: Checks whether there is pending output to be collected after executing the flow item.
hasPixelPosition() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Checks whether a pixel position is available.
heightTipText() - Method in class adams.data.imagej.transformer.Resize: Returns the tip text for this property.
heightTipText() - Method in class adams.data.jai.flattener.PixelClassifications: Returns the tip text for this property.
heightTipText() - Method in class adams.data.jai.transformer.Crop: Returns the tip text for this property.
heightTipText() - Method in class adams.data.jai.transformer.Resize: Returns the tip text for this property.
heightTipText() - Method in class adams.flow.source.JAICreateImage: Returns the tip text for this property.
Histogram - Class in adams.data.imagej.flattener: Turns an image into a histogram.
In case of an 8-bit histogram, the image must already be converted to a gray image.
Histogram() - Constructor for class adams.data.imagej.flattener.Histogram
Histogram - Class in adams.data.jai.flattener: Turns an image into a histogram.
In case of an 8-bit histogram, the image must already be converted to a gray image.
Histogram() - Constructor for class adams.data.jai.flattener.Histogram
Histogram.HistogramType - Enum in adams.data.imagej.flattener: The type of histogram to generate.
Histogram.HistogramType - Enum in adams.data.jai.flattener: The type of histogram to generate.
histogramTypeTipText() - Method in class adams.data.imagej.flattener.Histogram: Returns the tip text for this property.
histogramTypeTipText() - Method in class adams.data.jai.flattener.Histogram: Returns the tip text for this property.

I

ImageInfo - Class in adams.flow.transformer: Obtains information from the picture passing through.
ImageInfo() - Constructor for class adams.flow.transformer.ImageInfo
ImageInfo.InfoType - Enum in adams.flow.transformer: The type of information to retrieve.
ImageJ - Class in adams.gui.menu: Starts the ImageJ GUI.
ImageJ() - Constructor for class adams.gui.menu.ImageJ: Initializes the menu item with no owner.
ImageJ(AbstractApplicationFrame) - Constructor for class adams.gui.menu.ImageJ: Initializes the menu item.
ImageJFlattener - Class in adams.flow.transformer: Applies an ImageJ flattener to the incoming image and outputs the generated WEKA Instance(s).
ImageJFlattener() - Constructor for class adams.flow.transformer.ImageJFlattener
ImageJReader - Class in adams.flow.transformer: Reads any file format that ImageJ can read.
ImageJReader() - Constructor for class adams.flow.transformer.ImageJReader
ImageJToBufferedImage - Class in adams.data.conversion: Turns an ImageJ container into a BufferedImage one.
ImageJToBufferedImage() - Constructor for class adams.data.conversion.ImageJToBufferedImage
ImageJTransformer - Class in adams.flow.transformer: Applies an ImageJ transformation to the incoming image and outputs the generated image(s).
ImageJTransformer() - Constructor for class adams.flow.transformer.ImageJTransformer
ImageJTransformer - Class in adams.gui.visualization.image.plugins: Allows the user to apply an ImageJ transformer to an image in the ImageViewer.
ImageJTransformer() - Constructor for class adams.gui.visualization.image.plugins.ImageJTransformer
ImageJWriter - Class in adams.flow.sink: Actor for saving an ImagePlus object as image file.
ImageJWriter() - Constructor for class adams.flow.sink.ImageJWriter
ImageJWriter.ImageType - Enum in adams.flow.sink: The type of the image to create.
ImageMagick - Class in adams.gui.visualization.image.plugins: Allows the user to apply ImageMagick commands.
ImageMagick() - Constructor for class adams.gui.visualization.image.plugins.ImageMagick
ImageMagickHelper - Class in adams.core: Helper class for ImageMagick (http://www.imagemagick.org/).
ImageMagickHelper() - Constructor for class adams.core.ImageMagickHelper
ImageMagickReader - Class in adams.flow.transformer: Reads any file format that ImageMagick can read.
NB: Uses im4java, i.e., ImageMagick (http://www.imagemagick.org/) executables must be available on the PATH.
ImageMagickReader() - Constructor for class adams.flow.transformer.ImageMagickReader
ImageMagickTransformer - Class in adams.flow.transformer: Converts an image using ImageMagick.
In order to make entering of commands easier, they can be spread over multiple lines and line comments can be inserted as well (a line comment starts with '#').

NB: Uses im4java, i.e., ImageMagick (http://www.imagemagick.org/) executables must be available on the PATH.
ImageMagickTransformer() - Constructor for class adams.flow.transformer.ImageMagickTransformer
ImageMagickWriter - Class in adams.flow.sink: Writes an image to disk using ImageMagick (http://www.imagemagick.org/).
ImageMagickWriter() - Constructor for class adams.flow.sink.ImageMagickWriter
ImageMagickWriter.ImageType - Enum in adams.flow.sink: The type of the image to create.
imageOverlays() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Returns an iterator over all the image overlays.
ImagePlusContainer - Class in adams.data.imagej: Image wrapper around an ImagePlus used by ImageJ.
ImagePlusContainer() - Constructor for class adams.data.imagej.ImagePlusContainer
imageTypeTipText() - Method in class adams.flow.sink.ImageJWriter: Returns the tip text for this property.
imageTypeTipText() - Method in class adams.flow.sink.ImageMagickWriter: Returns the tip text for this property.
imageTypeTipText() - Method in class adams.flow.sink.JAIWriter: Returns the tip text for this property.
initGUI() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Initializes the widgets.
initialize() - Method in class adams.flow.transformer.ImageJFlattener: Initializes the members.
initialize() - Method in class adams.flow.transformer.ImageJTransformer: Initializes the members.
initialize() - Method in class adams.flow.transformer.JAIFlattener: Initializes the members.
initialize() - Method in class adams.flow.transformer.JAITransformer: Initializes the members.
initialize() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Initializes the members.
initialize() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Initializes the members.
interpolationTipText() - Method in class adams.data.jai.transformer.Rotate: Returns the tip text for this property.
interpolationTypeTipText() - Method in class adams.data.jai.transformer.Resize: Returns the tip text for this property.
isConvertAvailable() - Static method in class adams.core.ImageMagickHelper: Checks whether the "convert" utility is available.
isSingleton() - Method in class adams.gui.menu.ImageJ: Whether the panel can only be displayed once.

J

JAICreateImage - Class in adams.flow.source: Generates an empty image with the specified dimensions.
JAICreateImage() - Constructor for class adams.flow.source.JAICreateImage
JAIFlattener - Class in adams.flow.transformer: Applies an JAI flattener to the incoming image and outputs the generated WEKA Instance(s).
JAIFlattener() - Constructor for class adams.flow.transformer.JAIFlattener
JAIHelper - Class in adams.core: Helper class for JAI operations.
JAIHelper() - Constructor for class adams.core.JAIHelper
JAIReader - Class in adams.flow.transformer: Reads any file format that Java Advanced Imaging (JAI) can read.
JAIReader() - Constructor for class adams.flow.transformer.JAIReader
JAITransformer - Class in adams.flow.transformer: Applies an JAI transformation to the incoming image and outputs the generated image(s).
JAITransformer() - Constructor for class adams.flow.transformer.JAITransformer
JAITransformer - Class in adams.gui.visualization.image.plugins: Allows the user to apply a JAI transformer to an image in the ImageViewer.
JAITransformer() - Constructor for class adams.gui.visualization.image.plugins.JAITransformer
JAIWriter - Class in adams.flow.sink: Writes an image to disk using Java Advanced Imaging (JAI).
JAIWriter() - Constructor for class adams.flow.sink.JAIWriter
JAIWriter.ImageType - Enum in adams.flow.sink: The type of the image to create.

L

labelsTipText() - Method in class adams.flow.transformer.pixelselector.AddClassification: Returns the tip text for this property.
launch() - Method in class adams.gui.menu.ImageJ: Launches the functionality of the menu item.

M

m_ActionListeners - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the action listeners.
m_Actions - Variable in class adams.flow.transformer.PixelSelector: the actions that are available from the popup menu.
m_Actions - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the actions that are available from the popup menu.
m_ActualFilter - Variable in class adams.data.imagej.transformer.PlugInFilter: the actual filter.
m_ActualScheme - Variable in class adams.data.imagej.flattener.NamedSetup: the actual scheme.
m_ActualScheme - Variable in class adams.data.imagej.transformer.NamedSetup: the actual scheme.
m_ActualScheme - Variable in class adams.data.jai.flattener.NamedSetup: the actual scheme.
m_ActualScheme - Variable in class adams.data.jai.transformer.NamedSetup: the actual scheme.
m_Anchor - Variable in class adams.data.jai.flattener.PixelClassifications: where to anchor the position on the rectangle.
m_Anchor - Variable in class adams.data.jai.transformer.Crop: where to anchor the position on the rectangle.
m_Angle - Variable in class adams.data.jai.transformer.Rotate: the angle to rotate the image by.
m_Approved - Variable in class adams.flow.transformer.PixelSelector: whether the user approved (or canceled) the dialog.
m_Background - Variable in class adams.data.jai.transformer.Rotate: the background color.
m_Background - Variable in class adams.flow.source.JAICreateImage: the background color.
m_ButtonCancel - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the Cancel button.
m_ButtonOK - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the OK button.
m_Color - Variable in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay: the color of the overlay.
m_Color - Variable in class adams.flow.transformer.SetImagePixel: the color of the pixel.
m_ColorProvider - Variable in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay: the color of the overlay.
m_Command - Variable in class adams.data.imagej.transformer.Command: the command to run.
m_CommandOptions - Variable in class adams.data.imagej.transformer.Command: the options for the command.
m_Commands - Variable in class adams.data.imagej.transformer.Macro: the macro commands.
m_Commands - Variable in class adams.flow.transformer.ImageMagickTransformer: the commands to execute.
m_Compress - Variable in class adams.gui.print.TIFFWriter: whether to compress the image.
m_ConvertPresent - Static variable in class adams.core.ImageMagickHelper: whether "convert" is present.
m_CurrentImages - Variable in class adams.flow.transformer.ImageJTransformer: the generated images.
m_CurrentImages - Variable in class adams.flow.transformer.JAITransformer: the generated images.
m_Fields - Variable in class adams.data.image.AbstractImageFlattener: fields to add to the output data.
m_FlattenAlgorithm - Variable in class adams.flow.transformer.ImageJFlattener: the transformer to apply to the image.
m_FlattenAlgorithm - Variable in class adams.flow.transformer.JAIFlattener: the transformer to apply to the image.
m_Header - Variable in class adams.data.image.AbstractImageFlattener: the current header.
m_Height - Variable in class adams.data.imagej.transformer.Resize: the new height.
m_Height - Variable in class adams.data.jai.flattener.PixelClassifications: the height of the crop rectangle.
m_Height - Variable in class adams.data.jai.transformer.Crop: the height of the crop rectangle.
m_Height - Variable in class adams.data.jai.transformer.Resize: the new height.
m_Height - Variable in class adams.flow.source.JAICreateImage: the height of the image.
m_HistogramType - Variable in class adams.data.imagej.flattener.Histogram: the type of histogram to generate.
m_HistogramType - Variable in class adams.data.jai.flattener.Histogram: the type of histogram to generate.
m_Image - Variable in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay: the underlying image.
m_Image - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the current image container.
m_ImagePanel - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the image panel.
m_ImageType - Variable in class adams.flow.sink.ImageJWriter: the image type to create.
m_ImageType - Variable in class adams.flow.sink.ImageMagickWriter: the image type to create.
m_ImageType - Variable in class adams.flow.sink.JAIWriter: the image type to create.
m_Interpolation - Variable in class adams.data.jai.transformer.Rotate: the interpolation type.
m_InterpolationType - Variable in class adams.data.jai.transformer.Resize: the type of interpolation to perform.
m_Labels - Variable in class adams.flow.transformer.pixelselector.AddClassification: the classification labels to use.
m_LastActionResult - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the last action result for a selector action.
m_MenuBar - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the menu bar.
m_Notes - Variable in class adams.data.image.AbstractImageFlattener: the notes to add as attributes.
m_NumSubsampleBits - Variable in class adams.data.jai.transformer.Resize: the number of subsample bits.
m_OptionManager - Variable in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: for managing the available options.
m_OriginX - Variable in class adams.data.jai.transformer.Rotate: the X origin.
m_OriginY - Variable in class adams.data.jai.transformer.Rotate: the Y origin.
m_OutputToken - Variable in class adams.flow.source.JAICreateImage: the generated image token.
m_Overlays - Variable in class adams.flow.transformer.PixelSelector: the overlays to use.
m_PlugInFilter - Variable in class adams.data.imagej.transformer.PlugInFilter: the classname of the plugin-filter.
m_PlugInOptions - Variable in class adams.data.imagej.transformer.PlugInFilter: the options for the plugin (if dialog suppressed).
m_Queue - Variable in class adams.flow.transformer.ImageJFlattener: the generated Instance objects.
m_Queue - Variable in class adams.flow.transformer.JAIFlattener: the generated Instance objects.
m_Radius - Variable in class adams.data.jai.transformer.GaussianBlur: the radius to use.
m_RememberLastSelection - Variable in class adams.flow.transformer.pixelselector.AddClassification: whether to remember the last selection.
m_ReportTable - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the report table.
m_Result - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the result (ok or cancel).
m_RGBA - Variable in class adams.flow.transformer.SetImagePixel: the RGBA value of the pixel.
m_SeparateRGB - Variable in class adams.data.jai.flattener.PixelClassifications: whether to output the RGB values in separate attributes.
m_SeparateRGB - Variable in class adams.data.jai.flattener.Pixels: whether to output the RGB values in separate attributes.
m_Setup - Variable in class adams.data.imagej.flattener.NamedSetup: the name of the setup to load.
m_Setup - Variable in class adams.data.imagej.transformer.NamedSetup: the name of the setup to load.
m_Setup - Variable in class adams.data.jai.flattener.NamedSetup: the name of the setup to load.
m_Setup - Variable in class adams.data.jai.transformer.NamedSetup: the name of the setup to load.
m_ShowIndex - Variable in class adams.flow.transformer.pixelselector.ClassificationOverlay: whether to display the index.
m_ShowLabel - Variable in class adams.flow.transformer.pixelselector.ClassificationOverlay: whether to display the label.
m_SplitPane - Variable in class adams.flow.transformer.pixelselector.PixelSelectorPanel: the split pane.
m_SplitterPosition - Variable in class adams.flow.transformer.PixelSelector: the position of the splitter.
m_SuppressPlugInDialog - Variable in class adams.data.imagej.transformer.PlugInFilter: whether to suppress the plugin dialog.
m_TransformAlgorithm - Variable in class adams.flow.transformer.ImageJTransformer: the transformer to apply to the image.
m_TransformAlgorithm - Variable in class adams.flow.transformer.JAITransformer: the transformer to apply to the image.
m_Type - Variable in class adams.flow.transformer.ImageInfo: the type of information to generate.
m_Type - Variable in class adams.flow.transformer.SetImagePixel: what type of value to use for the pixel.
m_Width - Variable in class adams.data.imagej.transformer.Resize: the new width.
m_Width - Variable in class adams.data.jai.flattener.PixelClassifications: the width of the crop rectangle.
m_Width - Variable in class adams.data.jai.transformer.Crop: the width of the crop rectangle.
m_Width - Variable in class adams.data.jai.transformer.Resize: the new width.
m_Width - Variable in class adams.flow.source.JAICreateImage: the width of the image.
m_X - Variable in class adams.data.jai.transformer.Crop: the X position of the crop rectangle.
m_X - Variable in class adams.flow.transformer.SetImagePixel: the X position of the pixel (1-based).
m_Y - Variable in class adams.data.jai.transformer.Crop: the Y position of the crop rectangle.
m_Y - Variable in class adams.flow.transformer.SetImagePixel: the Y position of the pixel (1-based).
Macro - Class in adams.data.imagej.transformer: Executes the macro commands to transform the image.
Due to ImageJ's architecture, only a single ImageJ instance is available in a process at any given time.
Macro() - Constructor for class adams.data.imagej.transformer.Macro
makeKernel(float) - Method in class adams.data.jai.transformer.GaussianBlur: Make a Gaussian blur kernel.
matches(File) - Method in enum adams.flow.sink.ImageMagickWriter.ImageType: Checks whether the file matches the extension of this item.
matches(String) - Method in enum adams.flow.sink.ImageMagickWriter.ImageType: Checks whether the file matches the extension of this item.
matches(File) - Method in enum adams.flow.sink.JAIWriter.ImageType: Checks whether the file matches the extension of this item.
matches(String) - Method in enum adams.flow.sink.JAIWriter.ImageType: Checks whether the file matches the extension of this item.
MOUSE_POSITION - Static variable in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: the mouse position key.

N

NamedSetup - Class in adams.data.imagej.flattener: Applies an ImageJ flattener that is referenced via its global setup name (see 'NamedSetups').
NamedSetup() - Constructor for class adams.data.imagej.flattener.NamedSetup
NamedSetup - Class in adams.data.imagej.transformer: Applies an ImageJ flattener that is referenced via its global setup name (see 'NamedSetups').
NamedSetup() - Constructor for class adams.data.imagej.transformer.NamedSetup
NamedSetup - Class in adams.data.jai.flattener: Applies a JAI flattener that is referenced via its global setup name (see 'NamedSetups').
NamedSetup() - Constructor for class adams.data.jai.flattener.NamedSetup
NamedSetup - Class in adams.data.jai.transformer: Applies an JAI flattener that is referenced via its global setup name (see 'NamedSetups').
NamedSetup() - Constructor for class adams.data.jai.transformer.NamedSetup
newArray(int) - Method in class adams.data.image.AbstractImageFlattener: Returns a double array filled with missing values.
newOptionManager() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Returns a new instance of the option manager.
newPanel() - Method in class adams.flow.transformer.PixelSelector: Creates the panel to display in the dialog.
notesTipText() - Method in class adams.data.image.AbstractImageFlattener: Returns the tip text for this property.
notifyActionListeners(int) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Notifies all the action listeners.
numSubsampleBitsTipText() - Method in class adams.data.jai.transformer.Resize: Returns the tip text for this property.

O

originXTipText() - Method in class adams.data.jai.transformer.Rotate: Returns the tip text for this property.
originYTipText() - Method in class adams.data.jai.transformer.Rotate: Returns the tip text for this property.
output() - Method in class adams.flow.source.JAICreateImage: Returns the generated token.
output() - Method in class adams.flow.transformer.ImageJFlattener: Returns the generated token.
output() - Method in class adams.flow.transformer.ImageJTransformer: Returns the generated token.
output() - Method in class adams.flow.transformer.JAIFlattener: Returns the generated token.
output() - Method in class adams.flow.transformer.JAITransformer: Returns the generated token.
outputFileTipText() - Method in class adams.flow.sink.ImageJWriter: Returns the tip text for this property.
outputFileTipText() - Method in class adams.flow.sink.ImageMagickWriter: Returns the tip text for this property.
outputFileTipText() - Method in class adams.flow.sink.JAIWriter: Returns the tip text for this property.
overlaysTipText() - Method in class adams.flow.transformer.PixelSelector: Returns the tip text for this property.

P

paintOverlay(ImagePanel.PaintPanel, Graphics) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Paints the overlay over the image.

PANEL - Static variable in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

the panel this action is for.

parse(String) - Method in enum adams.data.imagej.flattener.Histogram.HistogramType

Parses the given string and returns the associated enum.

parse(String) - Method in enum adams.data.jai.flattener.Histogram.HistogramType

Parses the given string and returns the associated enum.

parse(String) - Method in enum adams.flow.sink.ImageMagickWriter.ImageType

Parses the given string and returns the associated enum.

parse(String) - Method in enum adams.flow.sink.JAIWriter.ImageType

Parses the given string and returns the associated enum.

PassThrough - Class in adams.data.imagej.transformer

A dummy transform that just passes the image through.

PassThrough() - Constructor for class adams.data.imagej.transformer.PassThrough

PassThrough - Class in adams.data.jai.transformer

A dummy transform that just passes the image through.

PassThrough() - Constructor for class adams.data.jai.transformer.PassThrough

paste() - Method in class adams.gui.clipboard.BufferedImage

Pastes the data from the clipboard.

performDFT(BufferedImageContainer) - Method in class adams.data.jai.flattener.DFT

Performs DFT on the image.

PIXEL_BOTTOM - Static variable in class adams.flow.transformer.pixelselector.BottomRightCorner

the pixel location bottom.

PIXEL_LEFT - Static variable in class adams.flow.transformer.pixelselector.TopLeftCorner

the pixel location left.

PIXEL_POSITION - Static variable in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

the pixel position key.

PIXEL_RIGHT - Static variable in class adams.flow.transformer.pixelselector.BottomRightCorner

the pixel location right.

PIXEL_TOP - Static variable in class adams.flow.transformer.pixelselector.TopLeftCorner

the pixel location top.

PIXEL_X - Static variable in class adams.flow.transformer.pixelselector.AddClassification

the pixel location X prefix.

PIXEL_X - Static variable in class adams.flow.transformer.pixelselector.SimpleSelect

the pixel location X.

PIXEL_Y - Static variable in class adams.flow.transformer.pixelselector.AddClassification

the pixel location Y prefix.

PIXEL_Y - Static variable in class adams.flow.transformer.pixelselector.SimpleSelect

the pixel location Y.

PixelClassifications - Class in adams.data.jai.flattener

Generates an instance for each pixel classification that is stored in the image's report.
Pixel classifications are generated with the adams.flow.transformer.PixelSelector transformer, using the adams.flow.transformer.pixelselector.AddClassification action.

PixelClassifications() - Constructor for class adams.data.jai.flattener.PixelClassifications

Pixels - Class in adams.data.imagej.flattener

Gets all the pixels of the image.

Pixels() - Constructor for class adams.data.imagej.flattener.Pixels

Pixels - Class in adams.data.jai.flattener

Gets all the pixels of the image.

Pixels() - Constructor for class adams.data.jai.flattener.Pixels

PixelSelector - Class in adams.flow.transformer

Allows the user to select pixels.

PixelSelector() - Constructor for class adams.flow.transformer.PixelSelector

PixelSelectorPanel - Class in adams.flow.transformer.pixelselector

Combines an ImagePanel and a Report table.

PixelSelectorPanel() - Constructor for class adams.flow.transformer.pixelselector.PixelSelectorPanel

PlugInFilter - Class in adams.data.imagej.transformer

A transformer that allows the use of ImageJ's plug-in filters.
Notes:
- the filter must implement 'ij.plugin.filter.PlugInFilter'
- the filter can pop-up a window to enter additional parameters,
the first time it is executed, depending on the filter implementation
(you can suppress this with supplying the options manually)
- the manual options string can be obtained when recording macros
in ImageJ
- the filter must be in the classpath of the application

Valid options are:

PlugInFilter() - Constructor for class adams.data.imagej.transformer.PlugInFilter

plugInFilterTipText() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the tip text for this property.

plugInOptionsTipText() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the tip text for this property.

postProcessHeader(Instances) - Method in class adams.data.image.AbstractImageFlattener

Post-processes the header, adding fields and notes.

postProcessInstance(T, Instance) - Method in class adams.data.image.AbstractImageFlattener

Post-processes the generated instance, adding notes and fields.

pruneBackup() - Method in class adams.flow.transformer.ImageJFlattener

Removes entries from the backup.

pruneBackup() - Method in class adams.flow.transformer.ImageJTransformer

Removes entries from the backup.

pruneBackup() - Method in class adams.flow.transformer.JAIFlattener

Removes entries from the backup.

pruneBackup() - Method in class adams.flow.transformer.JAITransformer

Removes entries from the backup.

R

radiusTipText() - Method in class adams.data.jai.transformer.GaussianBlur

Returns the tip text for this property.

read(File) - Static method in class adams.core.ImageMagickHelper

Reads a BufferedImage from the file.

read(URL) - Static method in class adams.core.ImageMagickHelper

Reads a BufferedImage from a URL.

read(InputStream) - Static method in class adams.core.ImageMagickHelper

Reads a BufferedImage from the stream.

read(File) - Static method in class adams.core.JAIHelper

Loads the specified file.

read(String) - Static method in class adams.core.JAIHelper

Loads the specified file.

RectangleOverlay - Class in adams.flow.transformer.pixelselector

Simply highlights the selected pixel

Some actions that generate data for this overlay:
adams.flow.transformer.pixelselector.TopLeftCorner
adams.flow.transformer.pixelselector.BottomRightCorner

Valid options are:

RectangleOverlay() - Constructor for class adams.flow.transformer.pixelselector.RectangleOverlay

rememberLastSelectionTipText() - Method in class adams.flow.transformer.pixelselector.AddClassification

Returns the tip text for this property.

removeActionListener(ActionListener) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Removes a listener for button actions.

removeImageOverlay(ImageOverlay) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Removes the image overlay.

reset() - Method in class adams.data.image.AbstractImageFlattener

Resets the scheme, i.e., the header information.

reset() - Method in class adams.data.imagej.flattener.NamedSetup

Resets the filter.

reset() - Method in class adams.data.imagej.transformer.NamedSetup

Resets the filter.

reset() - Method in class adams.data.imagej.transformer.PlugInFilter

Resets the scheme.

reset() - Method in class adams.data.jai.flattener.NamedSetup

Resets the filter.

reset() - Method in class adams.data.jai.transformer.NamedSetup

Resets the filter.

reset() - Method in class adams.flow.transformer.ImageJFlattener

Resets the scheme.

reset() - Method in class adams.flow.transformer.JAIFlattener

Resets the scheme.

reset() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Resets the scheme.

Resize - Class in adams.data.imagej.transformer

Resizes the image to predefined width and height.

Resize() - Constructor for class adams.data.imagej.transformer.Resize

Resize - Class in adams.data.jai.transformer

Resizes the image to predefined width and height.

Resize() - Constructor for class adams.data.jai.transformer.Resize

Resize.InterpolationType - Enum in adams.data.jai.transformer

Type of interpolaction.

restoreState(Hashtable<String, Object>) - Method in class adams.flow.transformer.ImageJFlattener

Restores the state of the actor before the variables got updated.

restoreState(Hashtable<String, Object>) - Method in class adams.flow.transformer.ImageJTransformer

Restores the state of the actor before the variables got updated.

restoreState(Hashtable<String, Object>) - Method in class adams.flow.transformer.JAIFlattener

Restores the state of the actor before the variables got updated.

restoreState(Hashtable<String, Object>) - Method in class adams.flow.transformer.JAITransformer

Restores the state of the actor before the variables got updated.

RGBATipText() - Method in class adams.flow.transformer.SetImagePixel

Returns the tip text for this property.

Rotate - Class in adams.data.jai.transformer

Rotates an image by a defined number of degrees.

Rotate() - Constructor for class adams.data.jai.transformer.Rotate

Rotate.InterpolationType - Enum in adams.data.jai.transformer

The types of interpolations.

S

separateRGBTipText() - Method in class adams.data.jai.flattener.PixelClassifications

Returns the tip text for this property.

separateRGBTipText() - Method in class adams.data.jai.flattener.Pixels

Returns the tip text for this property.

setActions(AbstractPixelSelectorAction[]) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Sets the available popup actions.

setActions(AbstractPixelSelectorAction[]) - Method in class adams.flow.transformer.PixelSelector

Sets the available popup actions.

setAnchor(Crop.Anchor) - Method in class adams.data.jai.flattener.PixelClassifications

Sets where to anchor the position on the rectangle.

setAnchor(Crop.Anchor) - Method in class adams.data.jai.transformer.Crop

Sets where to anchor the position on the rectangle.

setAngle(double) - Method in class adams.data.jai.transformer.Rotate

Sets the rotation angle.

setBackground(Color) - Method in class adams.data.jai.transformer.Rotate

Sets the color to use for the background.

setBackground(Color) - Method in class adams.flow.source.JAICreateImage

Sets the background color of the image.

setColor(Color) - Method in class adams.flow.transformer.pixelselector.AbstractSingleColorPixelSelectorOverlay

Sets the color for the overlay.

setColor(Color) - Method in class adams.flow.transformer.SetImagePixel

Sets the color of the pixel.

setColorProvider(AbstractColorProvider) - Method in class adams.flow.transformer.pixelselector.AbstractColorProviderPixelSelectorOverlay

Sets the color provider for the overlay.

setCommand(String) - Method in class adams.data.imagej.transformer.Command

Sets the command to execute.

setCommandOptions(String) - Method in class adams.data.imagej.transformer.Command

Sets the options for the command.

setCommands(BaseText) - Method in class adams.data.imagej.transformer.Macro

Sets the width to resize to.

setCommands(BaseText) - Method in class adams.flow.transformer.ImageMagickTransformer

Sets the commands to execute.

setCompress(boolean) - Method in class adams.gui.print.TIFFWriter

Sets whether to compress the image.

setFields(Field[]) - Method in class adams.data.image.AbstractImageFlattener

Sets the targets to add.

setFlattenAlgorithm(AbstractImageJFlattener) - Method in class adams.flow.transformer.ImageJFlattener

Sets the flattener to use.

setFlattenAlgorithm(AbstractJAIFlattener) - Method in class adams.flow.transformer.JAIFlattener

Sets the flattener to use.

setHeight(int) - Method in class adams.data.imagej.transformer.Resize

Sets the height to resize to.

setHeight(int) - Method in class adams.data.jai.flattener.PixelClassifications

Sets the height of the crop rectangle.

setHeight(int) - Method in class adams.data.jai.transformer.Crop

Sets the height of the crop rectangle.

setHeight(int) - Method in class adams.data.jai.transformer.Resize

Sets the height to resize to.

setHeight(int) - Method in class adams.flow.source.JAICreateImage

Sets the height of the image.

setHistogramType(Histogram.HistogramType) - Method in class adams.data.imagej.flattener.Histogram

Sets the type of histogram to generate.

setHistogramType(Histogram.HistogramType) - Method in class adams.data.jai.flattener.Histogram

Sets the type of histogram to generate.

setImage(AbstractImage) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Sets the underlying image.

setImage(AbstractImage) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Sets the image.

SetImagePixel - Class in adams.flow.transformer

Obtains information from the picture passing through.

SetImagePixel() - Constructor for class adams.flow.transformer.SetImagePixel

SetImagePixel.PixelValueType - Enum in adams.flow.transformer

Enumeration that determines what value to use for the pixel.

setImageType(ImageJWriter.ImageType) - Method in class adams.flow.sink.ImageJWriter

Sets the type of image to create.

setImageType(ImageMagickWriter.ImageType) - Method in class adams.flow.sink.ImageMagickWriter

Sets the type of image to create.

setImageType(JAIWriter.ImageType) - Method in class adams.flow.sink.JAIWriter

Sets the type of image to create.

setInterpolation(Rotate.InterpolationType) - Method in class adams.data.jai.transformer.Rotate

Sets the type of interpolation to perform.

setInterpolationType(Resize.InterpolationType) - Method in class adams.data.jai.transformer.Resize

Sets the type of interpolation to use.

setLabels(BaseString[]) - Method in class adams.flow.transformer.pixelselector.AddClassification

Sets the available classification labels.

setLastActionResult(Class, Object) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Stores the result for the specified action.

setMousePosition(Point) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Stores the mouse position in the action.

setNotes(BaseString[]) - Method in class adams.data.image.AbstractImageFlattener

Sets the notes to add as attributes.

setNumSubsampleBits(int) - Method in class adams.data.jai.transformer.Resize

Sets the precision for subsampling in bits.

setOriginX(int) - Method in class adams.data.jai.transformer.Rotate

Sets the X of the origin.

setOriginY(int) - Method in class adams.data.jai.transformer.Rotate

Sets the Y of the origin.

setOverlays(AbstractPixelSelectorOverlay[]) - Method in class adams.flow.transformer.PixelSelector

Sets the available image overlays.

setPanel(PixelSelectorPanel) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Stores the panel in the action.

setPixelPosition(Point) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction

Stores the pixel position in the action.

setPlugInFilter(String) - Method in class adams.data.imagej.transformer.PlugInFilter

Sets the classname of the plugin filter to use.

setPlugInOptions(String) - Method in class adams.data.imagej.transformer.PlugInFilter

Sets the options for the plug-in if the dialog gets suppressed.

setRadius(double) - Method in class adams.data.jai.transformer.GaussianBlur

Sets the blur radius.

setRememberLastSelection(boolean) - Method in class adams.flow.transformer.pixelselector.AddClassification

Sets whether to remember the last selected label.

setRGBA(int) - Method in class adams.flow.transformer.SetImagePixel

Sets the RGBA value of the pixel.

setSeparateRGB(boolean) - Method in class adams.data.jai.flattener.PixelClassifications

Sets whether to separate the RGB values or not.

setSeparateRGB(boolean) - Method in class adams.data.jai.flattener.Pixels

Sets whether to separate the RGB values or not.

setSetup(NamedSetup) - Method in class adams.data.imagej.flattener.NamedSetup

Sets the setup name.

setSetup(NamedSetup) - Method in class adams.data.imagej.transformer.NamedSetup

Sets the setup name.

setSetup(NamedSetup) - Method in class adams.data.jai.flattener.NamedSetup

Sets the setup name.

setSetup(NamedSetup) - Method in class adams.data.jai.transformer.NamedSetup

Sets the setup name.

setShowIndex(boolean) - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Sets whether to show the index.

setShowLabel(boolean) - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Sets whether to show the label.

setSplitterPosition(int) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel

Sets the location of the splitter/divider.

setSplitterPosition(int) - Method in class adams.flow.transformer.PixelSelector

Sets the initial position of the splitter in the viewer panel.

setSuppressPlugInDialog(boolean) - Method in class adams.data.imagej.transformer.PlugInFilter

Sets whether to suppress the plugin dialog.

setTransformAlgorithm(AbstractImageJTransformer) - Method in class adams.flow.transformer.ImageJTransformer

Sets the transformer to use.

setTransformAlgorithm(AbstractJAITransformer) - Method in class adams.flow.transformer.JAITransformer

Sets the transformer to use.

setType(ImageInfo.InfoType) - Method in class adams.flow.transformer.ImageInfo

Sets the type of information to generate.

setType(SetImagePixel.PixelValueType) - Method in class adams.flow.transformer.SetImagePixel

Sets the type of value to use.

setUp() - Method in class adams.flow.sink.ImageMagickWriter

Initializes the item for flow execution.

setUp() - Method in class adams.flow.transformer.ImageMagickReader

Initializes the item for flow execution.

setUp() - Method in class adams.flow.transformer.ImageMagickTransformer

Initializes the item for flow execution.

setUp() - Method in class adams.flow.transformer.PixelSelector

Initializes the item for flow execution.

setupTipText() - Method in class adams.data.imagej.flattener.NamedSetup

Returns the tip text for this property.

setupTipText() - Method in class adams.data.imagej.transformer.NamedSetup

Returns the tip text for this property.

setupTipText() - Method in class adams.data.jai.flattener.NamedSetup

Returns the tip text for this property.

setupTipText() - Method in class adams.data.jai.transformer.NamedSetup

Returns the tip text for this property.

setWidth(int) - Method in class adams.data.imagej.transformer.Resize

Sets the width to resize to.

setWidth(int) - Method in class adams.data.jai.flattener.PixelClassifications

Sets the width of the crop rectangle.

setWidth(int) - Method in class adams.data.jai.transformer.Crop

Sets the width of the crop rectangle.

setWidth(int) - Method in class adams.data.jai.transformer.Resize

Sets the width to resize to.

setWidth(int) - Method in class adams.flow.source.JAICreateImage

Sets the width of the image.

setX(int) - Method in class adams.data.jai.transformer.Crop

Sets the X position.

setX(int) - Method in class adams.flow.transformer.SetImagePixel

Sets the X position of the pixel.

setY(int) - Method in class adams.data.jai.transformer.Crop

Sets the Y position.

setY(int) - Method in class adams.flow.transformer.SetImagePixel

Sets the Y position of the pixel.

shallowCopy() - Method in class adams.data.image.AbstractImageFlattener

Returns a shallow copy of itself, i.e., based on the commandline options.

shallowCopy(boolean) - Method in class adams.data.image.AbstractImageFlattener

Returns a shallow copy of itself, i.e., based on the commandline options.

shallowCopy() - Method in class adams.data.image.AbstractImageTransformer

Returns a shallow copy of itself, i.e., based on the commandline options.

shallowCopy(boolean) - Method in class adams.data.image.AbstractImageTransformer

Returns a shallow copy of itself, i.e., based on the commandline options.

shallowCopy() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns a shallow copy of itself.

shallowCopy(boolean) - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorOverlay

Returns a shallow copy of itself.

showIndexTipText() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns the tip text for this property.

showLabelTipText() - Method in class adams.flow.transformer.pixelselector.ClassificationOverlay

Returns the tip text for this property.

SimpleOverlay - Class in adams.flow.transformer.pixelselector

Simply highlights the selected pixel

Some actions that generate data for this overlay:
adams.flow.transformer.pixelselector.SimpleSelect

Valid options are:

SimpleOverlay() - Constructor for class adams.flow.transformer.pixelselector.SimpleOverlay

SimpleSelect - Class in adams.flow.transformer.pixelselector

Allows the user to select a pixel location.
Stores the location in 'Pixel.X' and 'Pixel.Y'.

SimpleSelect() - Constructor for class adams.flow.transformer.pixelselector.SimpleSelect

splitterPositionTipText() - Method in class adams.flow.transformer.PixelSelector

Returns the tip text for this property.

suppressPlugInDialogTipText() - Method in class adams.data.imagej.transformer.PlugInFilter

Returns the tip text for this property.

T

tableChanged(TableModelEvent) - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Whenever the data in the report changes.
TIFFWriter - Class in adams.gui.print: Outputs TIFF images.
TIFFWriter() - Constructor for class adams.gui.print.TIFFWriter
toBufferedImage() - Method in class adams.data.imagej.ImagePlusContainer: Turns the image into a buffered image.
toBufferedImage() - Method in class adams.data.jai.BufferedImageContainer: Turns the image into a buffered image.
toCommandLine() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Returns the commandline string.
toDisplay() - Method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns the display string.
toDisplay() - Method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns the display string.
toDisplay() - Method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns the display string.
toDisplay() - Method in enum adams.flow.sink.JAIWriter.ImageType: Returns the display string.
TopLeftCorner - Class in adams.flow.transformer.pixelselector: Allows the user to select a pixel location of the top-left corner.
Stores the location in 'Pixel.Left' and 'Pixel.Top'.
TopLeftCorner() - Constructor for class adams.flow.transformer.pixelselector.TopLeftCorner
toRaw() - Method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns the raw enum string.
toRaw() - Method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns the raw enum string.
toRaw() - Method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns the raw enum string.
toRaw() - Method in enum adams.flow.sink.JAIWriter.ImageType: Returns the raw enum string.
toString() - Method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns the display string.
toString(AbstractOption, Object) - Static method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns the enum as string.
toString() - Method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns the display string.
toString(AbstractOption, Object) - Static method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns the enum as string.
toString() - Method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns the display string.
toString(AbstractOption, Object) - Static method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns the enum as string.
toString() - Method in enum adams.flow.sink.JAIWriter.ImageType: Returns the display string.
toString(AbstractOption, Object) - Static method in enum adams.flow.sink.JAIWriter.ImageType: Returns the enum as string.
toString() - Method in class adams.flow.transformer.pixelselector.AbstractPixelSelectorAction: Returns a string representation of the options.
transform(T) - Method in class adams.data.image.AbstractImageTransformer: Transforms the given image.
transformAlgorithmTipText() - Method in class adams.flow.transformer.ImageJTransformer: Returns the tip text for this property.
transformAlgorithmTipText() - Method in class adams.flow.transformer.JAITransformer: Returns the tip text for this property.
typeTipText() - Method in class adams.flow.transformer.ImageInfo: Returns the tip text for this property.
typeTipText() - Method in class adams.flow.transformer.SetImagePixel: Returns the tip text for this property.

U

unwrap(Token) - Method in class adams.gui.clipboard.BufferedImage: Unwraps the actual data from the token.
update() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Updates the report/image.
updateImage() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Updates the image.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.ImageJFlattener: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.ImageJReader: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.ImageJTransformer: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.ImageMagickReader: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.ImageMagickTransformer: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.JAIFlattener: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.JAIReader: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.JAITransformer: Updates the provenance information in the provided container.
updateProvenance(ProvenanceContainer) - Method in class adams.flow.transformer.PixelSelector: Updates the provenance information in the provided container.
updateReport() - Method in class adams.flow.transformer.pixelselector.PixelSelectorPanel: Updates the report.

V

valueOf(String) - Static method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns the enum constant of this type with the specified name.
valueOf(AbstractOption, String) - Static method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns an enum generated from the string.
valueOf(String) - Static method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns the enum constant of this type with the specified name.
valueOf(AbstractOption, String) - Static method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns an enum generated from the string.
valueOf(String) - Static method in enum adams.data.jai.transformer.Crop.Anchor: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum adams.data.jai.transformer.Resize.InterpolationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum adams.data.jai.transformer.Rotate.InterpolationType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum adams.flow.sink.ImageJWriter.ImageType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns the enum constant of this type with the specified name.
valueOf(AbstractOption, String) - Static method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns an enum generated from the string.
valueOf(String) - Static method in enum adams.flow.sink.JAIWriter.ImageType: Returns the enum constant of this type with the specified name.
valueOf(AbstractOption, String) - Static method in enum adams.flow.sink.JAIWriter.ImageType: Returns an enum generated from the string.
valueOf(String) - Static method in enum adams.flow.transformer.ImageInfo.InfoType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum adams.flow.transformer.SetImagePixel.PixelValueType: Returns the enum constant of this type with the specified name.
values() - Static method in enum adams.data.imagej.flattener.Histogram.HistogramType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.data.jai.flattener.Histogram.HistogramType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.data.jai.transformer.Crop.Anchor: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.data.jai.transformer.Resize.InterpolationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.data.jai.transformer.Rotate.InterpolationType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.flow.sink.ImageJWriter.ImageType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.flow.sink.ImageMagickWriter.ImageType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.flow.sink.JAIWriter.ImageType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.flow.transformer.ImageInfo.InfoType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum adams.flow.transformer.SetImagePixel.PixelValueType: Returns an array containing the constants of this enum type, in the order they are declared.

W

widthTipText() - Method in class adams.data.imagej.transformer.Resize: Returns the tip text for this property.
widthTipText() - Method in class adams.data.jai.flattener.PixelClassifications: Returns the tip text for this property.
widthTipText() - Method in class adams.data.jai.transformer.Crop: Returns the tip text for this property.
widthTipText() - Method in class adams.data.jai.transformer.Resize: Returns the tip text for this property.
widthTipText() - Method in class adams.flow.source.JAICreateImage: Returns the tip text for this property.
wrap(BufferedImage) - Method in class adams.gui.clipboard.BufferedImage: Wraps the data from the clipboard in a flow token.
wrapUp() - Method in class adams.flow.transformer.ImageJFlattener: Cleans up after the execution has finished.
wrapUp() - Method in class adams.flow.transformer.ImageJTransformer: Cleans up after the execution has finished.
wrapUp() - Method in class adams.flow.transformer.JAIFlattener: Cleans up after the execution has finished.
wrapUp() - Method in class adams.flow.transformer.JAITransformer: Cleans up after the execution has finished.

X

XTipText() - Method in class adams.data.jai.transformer.Crop: Returns the tip text for this property.
XTipText() - Method in class adams.flow.transformer.SetImagePixel: Returns the tip text for this property.

Y

YTipText() - Method in class adams.data.jai.transformer.Crop: Returns the tip text for this property.
YTipText() - Method in class adams.flow.transformer.SetImagePixel: Returns the tip text for this property.

A B C D E F G H I J L M N O P R S T U V W X Y

Overview

Package

Class

Use

Tree

Deprecated

Index

Help

PREV NEXT

FRAMES NO FRAMES