A B C D F G H I J K L M N O R S V

A

accepts() - Method in class adams.flow.sink.RSink

List of classes that can be used as input.

accepts() - Method in class adams.flow.transformer.RTransformer

List of classes that can be used as input.

adams.core.scripting - package adams.core.scripting

adams.flow.core - package adams.flow.core

adams.flow.sink - package adams.flow.sink

adams.flow.source - package adams.flow.source

adams.flow.standalone - package adams.flow.standalone

adams.flow.transformer - package adams.flow.transformer

adams.gui.core - package adams.gui.core

adams.gui.menu - package adams.gui.menu

adams.gui.tools - package adams.gui.tools

allowsInlineEditing() - Method in class adams.core.scripting.RScript

Returns whether inline editing in the GOE is allowed.

B

builder - Variable in class adams.flow.standalone.RStandalone

Used to build the process that will run JRI if it is needed.

C

cleanUp() - Method in class adams.flow.sink.RSink

Closes the Rserve connection as the panel closes.

cleanUp() - Method in class adams.flow.source.RSource

Closes the Rserve connection as the panel closes.

cleanUp() - Method in class adams.flow.standalone.RStandalone

Closes the Rserve connection as the panel closes.

cleanUp() - Method in class adams.flow.transformer.RTransformer

Closes the Rserve connection as the panel closes.

D

defineOptions() - Method in class adams.flow.sink.RSink

Adds to the internal list of options.

defineOptions() - Method in class adams.flow.source.RSource

Adds to the internal list of options.

defineOptions() - Method in class adams.flow.standalone.RSetup

Adds options to the internal list of options.

defineOptions() - Method in class adams.flow.standalone.RStandalone

Adds options to the internal list of options.

defineOptions() - Method in class adams.flow.transformer.RTransformer

Adds to the internal list of options.

doExecute() - Method in class adams.flow.sink.RSink

Executes the flow, including reading the input and returning R's output.

doExecute() - Method in class adams.flow.source.RSource

Connects with Rserve and feeds it the script and returns the resulting data.

doExecute() - Method in class adams.flow.standalone.RSetup

Does nothing here.

doExecute() - Method in class adams.flow.standalone.RStandalone

Connects to Rserve and feeds it the script.

doExecute() - Method in class adams.flow.transformer.RTransformer

Executes the flow, including reading the input and returning R's output.

F

FILENAME - Static variable in class adams.gui.core.RSyntaxEditorPanel

the props file with the style definitions.

G

generates() - Method in class adams.flow.source.RSource

Returns the datatype this flow is set to return.

generates() - Method in class adams.flow.transformer.RTransformer

List of classes this flow can return.

getCategory() - Method in class adams.gui.menu.RConsole

Returns the category of the menu item in which it should appear, i.e., the name of the menu.

getIconName() - Method in class adams.gui.menu.RConsole

Returns the file name of the icon.

getJRI() - Method in class adams.flow.standalone.RStandalone

Return whether to use JRI or not.

getQuickInfo() - Method in class adams.flow.transformer.RTransformer

getReturnType() - Method in class adams.flow.source.RSource

Returns the return type.

getReturnType() - Method in class adams.flow.transformer.RTransformer

Gets the type of object this flow returns.

getRHOME() - Method in class adams.flow.standalone.RSetup

Returns the script.

getRScript() - Method in class adams.flow.sink.RSink

Gets the script.

getRScript() - Method in class adams.flow.transformer.RTransformer

Gets the script.

getRSetup_RHOME(AbstractActor) - Static method in class adams.flow.core.RHelper

Returns the value of R_HOME as entered into the RSetup actor (the one nearest to the calling actor) if it exists, if it does not then it will return null.

getScript() - Method in class adams.flow.source.RSource

Returns to script.

getScript() - Method in class adams.flow.standalone.RStandalone

Returns the script.

getScriptTipText() - Method in class adams.core.scripting.RScript

Returns the tip text for the script.

getStyleProperties() - Method in class adams.gui.core.RSyntaxEditorPanel

Returns the syntax style definition.

getTextEditorPanel() - Method in class adams.core.scripting.RScript

Returns the configured text editor panel to use in the GOE.

getTitle() - Method in class adams.gui.menu.RConsole

Returns the title of the window (and text of menuitem).

getUserMode() - Method in class adams.gui.menu.RConsole

Returns the user mode, which determines visibility as well.

globalInfo() - Method in class adams.flow.sink.RSink

Info about this flow.

globalInfo() - Method in class adams.flow.source.RSource

Description of the flow.

globalInfo() - Method in class adams.flow.standalone.RSetup

Description of the actor.

globalInfo() - Method in class adams.flow.standalone.RStandalone

Overall description of this flow.

globalInfo() - Method in class adams.flow.transformer.RTransformer

Info about this flow.

H

hasPendingOutput() - Method in class adams.flow.source.RSource

Returns true if the is pending output.

hasPendingOutput() - Method in class adams.flow.transformer.RTransformer

Returns true if the is pending output.

I

initGUI() - Method in class adams.gui.tools.RConsolePanel

Initializes the GUI.

INPUT - Static variable in class adams.flow.sink.RSink

the placeholder for the input value.

INPUT - Static variable in class adams.flow.transformer.RTransformer

the placeholder for the input value.

insertString(DocumentFilter.FilterBypass, int, String, AttributeSet) - Method in class adams.gui.tools.RConsoleFilter

Called when a string is about to be inserted into the Document.

isSingleton() - Method in class adams.gui.menu.RConsole

Whether the panel can only be displayed once.

J

JRITipText() - Method in class adams.flow.standalone.RStandalone

Help message about this option.

K

keyPressed(KeyEvent) - Method in class adams.gui.tools.RConsoleKeyListener

Called when a key is pressed.

keyReleased(KeyEvent) - Method in class adams.gui.tools.RConsoleKeyListener

Called when a key is released.

keyTyped(KeyEvent) - Method in class adams.gui.tools.RConsoleKeyListener

This is called when a key is typed.

L

launch() - Method in class adams.gui.menu.RConsole

Launches the functionality of the menu item.

M

m_Console - Variable in class adams.gui.tools.RConsoleFilter

m_DocLength - Variable in class adams.gui.tools.RConsoleFilter

Total length of the document.

m_Filter - Variable in class adams.gui.tools.RConsolePanel

m_JRI - Variable in class adams.flow.standalone.RStandalone

Whether to use Rserve or JRI.

m_Listener - Variable in class adams.gui.tools.RConsolePanel

m_PromptPosition - Variable in class adams.gui.tools.RConsoleFilter

Current position of the prompt.

m_returnedObject - Variable in class adams.flow.source.RSource

Object returned from r

m_returnedObject - Variable in class adams.flow.transformer.RTransformer

Object returned from r

m_returnType - Variable in class adams.flow.source.RSource

Data type of object returned from r script

m_returnType - Variable in class adams.flow.transformer.RTransformer

Data type of object returned from r script

m_RHOME - Variable in class adams.flow.standalone.RSetup

m_Rserve - Variable in class adams.flow.sink.RSink

Connection to Rserve

m_Rserve - Variable in class adams.flow.source.RSource

Connection to Rserve

m_Rserve - Variable in class adams.flow.standalone.RStandalone

Connection to Rserve

m_Rserve - Variable in class adams.flow.transformer.RTransformer

Connection to Rserve

m_Script - Variable in class adams.flow.sink.RSink

Script to pass to r

m_Script - Variable in class adams.flow.source.RSource

Script to pass to r

m_Script - Variable in class adams.flow.standalone.RStandalone

Script to send to Rserve.

m_Script - Variable in class adams.flow.transformer.RTransformer

Script to pass to r

m_TextArea - Variable in class adams.gui.tools.RConsolePanel

main(String[]) - Static method in class adams.flow.standalone.RStandalone

Main method is only called when this is started in a new process for JRI.

main(String[]) - Static method in class adams.gui.menu.RConsole

Runs when this console is started in a new process.

moveCursor(int) - Method in class adams.gui.tools.RConsolePanel

Moves the caret to the specified location.

N

newConnection(int) - Static method in class adams.flow.core.RHelper

Creates a new connection to Rserve.

O

output() - Method in class adams.flow.source.RSource

Turns the returned object into a token to be passed through the system.

output() - Method in class adams.flow.transformer.RTransformer

Turns the returned object into a token to be passed through the system.

R

rBusy(Rengine, int) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine to let the user know when R is busy.

rChooseFile(Rengine, int) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine when R wants the user to choose a file.

RConsole - Class in adams.gui.menu

Brings up a simple R console.

RConsole() - Constructor for class adams.gui.menu.RConsole

Initializes the menu item with no owner.

RConsole(AbstractApplicationFrame) - Constructor for class adams.gui.menu.RConsole

Initializes the menu item.

RConsoleFilter - Class in adams.gui.tools

Filters input to a console to only allow edits after the prompt.

RConsoleFilter(RConsolePanel) - Constructor for class adams.gui.tools.RConsoleFilter

Initializes the filter with a console.

RConsoleKeyListener - Class in adams.gui.tools

Listens for the Return key being pressed and therefore a new line of input.

RConsoleKeyListener() - Constructor for class adams.gui.tools.RConsoleKeyListener

RConsolePanel - Class in adams.gui.tools

Acts as an interface with the R shell.

RConsolePanel() - Constructor for class adams.gui.tools.RConsolePanel

RDataType - Enum in adams.flow.core

Datatype containing the types of data that R flows can return.

remove(DocumentFilter.FilterBypass, int, int) - Method in class adams.gui.tools.RConsoleFilter

Called when a string is to be removed from the Document.

replace(DocumentFilter.FilterBypass, int, int, String, AttributeSet) - Method in class adams.gui.tools.RConsoleFilter

Called when a string to be replaced within the Document.

returnTypeTipText() - Method in class adams.flow.source.RSource

A description of the return type.

returnTypeTipText() - Method in class adams.flow.transformer.RTransformer

Tool tip about the return type.

rFlushConsole(Rengine) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine when R requests the console to flush any buffered output.

RHelper - Class in adams.flow.core

A helper class for things R related, specifically, JRI and Rserve.

RHelper() - Constructor for class adams.flow.core.RHelper

RHOMETipText() - Method in class adams.flow.standalone.RSetup

Description of the script.

rLoadHistory(Rengine, String) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine to load the contents of the history.

rReadConsole(Rengine, String, int) - Method in class adams.gui.tools.RConsolePanel

Called by REngine to read a line of input from the user.

rSaveHistory(Rengine, String) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine to save the contents of the history.

RScript - Class in adams.core.scripting

Wrapper for a R scripts to be editable in the GOE.

RScript() - Constructor for class adams.core.scripting.RScript

rScriptTipText() - Method in class adams.flow.sink.RSink

Tool tip about the script.

rScriptTipText() - Method in class adams.flow.transformer.RTransformer

Tool tip about the script.

RSetup - Class in adams.flow.standalone

Sets up some variables for R.

RSetup() - Constructor for class adams.flow.standalone.RSetup

rShowMessage(Rengine, String) - Method in class adams.gui.tools.RConsolePanel

Called by the REngine when R wants to show a warning/error message to the user.

RSink - Class in adams.flow.sink

A sink flow for R.

RSink() - Constructor for class adams.flow.sink.RSink

RSource - Class in adams.flow.source

A source flow for R

RSource() - Constructor for class adams.flow.source.RSource

RStandalone - Class in adams.flow.standalone

A standalone flow for R.

RStandalone() - Constructor for class adams.flow.standalone.RStandalone

RSyntaxEditorPanel - Class in adams.gui.core

Loads the syntax highlighting properties file for RScript.

RSyntaxEditorPanel() - Constructor for class adams.gui.core.RSyntaxEditorPanel

RTransformer - Class in adams.flow.transformer

A transformer flow for R.

RTransformer() - Constructor for class adams.flow.transformer.RTransformer

rWriteConsole(Rengine, String, int) - Method in class adams.gui.tools.RConsolePanel

Called by REngine to write some text to the console.

S

ScriptTipText() - Method in class adams.flow.source.RSource

Returns a description of the script.

ScriptTipText() - Method in class adams.flow.standalone.RStandalone

Description of the script.

setJRI(boolean) - Method in class adams.flow.standalone.RStandalone

Set whether to use JRI or not.

setPromptPosition(int) - Method in class adams.gui.tools.RConsoleFilter

Sets the position of the prompt.

setReturnType(RDataType) - Method in class adams.flow.source.RSource

Determines the return type of the flow.

setReturnType(RDataType) - Method in class adams.flow.transformer.RTransformer

Sets the type of object this flow returns.

setRHOME(String) - Method in class adams.flow.standalone.RSetup

Sets the script to be fed into R.

setRScript(RScript) - Method in class adams.flow.sink.RSink

Sets the script.

setRScript(RScript) - Method in class adams.flow.transformer.RTransformer

Sets the script.

setScript(RScript) - Method in class adams.flow.source.RSource

Sets the script to be fed to R.

setScript(RScript) - Method in class adams.flow.standalone.RStandalone

Sets the script to be fed into R.

setUp() - Method in class adams.flow.sink.RSink

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.source.RSource

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.standalone.RStandalone

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.transformer.RTransformer

Sets up the connection to Rserve.

V

valueOf(String) - Static method in enum adams.flow.core.RDataType

Returns the enum constant of this type with the specified name.

values() - Static method in enum adams.flow.core.RDataType

Returns an array containing the constants of this enum type, in the order they are declared.

A B C D F G H I J K L M N O R S V