A C D F G H I K L M N O P R S U V W

A

accepts() - Method in class adams.flow.sink.RSink

List of classes that can be used as input.

accepts() - Method in class adams.flow.transformer.RTransformer

List of classes that can be used as input.

activate() - Method in class adams.gui.application.RProjectSettingsPanel

Activates the proxy settings.

adams.core - package adams.core

adams.core.scripting - package adams.core.scripting

adams.env - package adams.env

adams.flow.sink - package adams.flow.sink

adams.flow.source - package adams.flow.source

adams.flow.standalone - package adams.flow.standalone

adams.flow.transformer - package adams.flow.transformer

adams.gui.application - package adams.gui.application

adams.gui.core - package adams.gui.core

allowsInlineEditing() - Method in class adams.core.scripting.RScript

Returns whether inline editing in the GOE is allowed.

C

closeConnection(RConnection) - Method in class adams.flow.standalone.Rserve

Closes the connection to Rserve properly.

D

dataFrameColumnsTipText() - Method in class adams.flow.source.RSource

A description of the return type.

dataFrameColumnsTipText() - Method in class adams.flow.transformer.RTransformer

A description of the return type.

dataframeToSpreadsheet(REXP) - Static method in class adams.core.RDataHelper

Converts the R dataframe into a spreadsheet.

dataframeToSpreadsheet(REXP, String[]) - Static method in class adams.core.RDataHelper

Converts the R dataframe into a spreadsheet.

defineOptions() - Method in class adams.flow.sink.RSink

Adds to the internal list of options.

defineOptions() - Method in class adams.flow.source.RSource

Adds to the internal list of options.

defineOptions() - Method in class adams.flow.standalone.Rserve

Adds options to the internal list of options.

defineOptions() - Method in class adams.flow.standalone.RStandalone

Adds options to the internal list of options.

defineOptions() - Method in class adams.flow.transformer.RTransformer

Adds to the internal list of options.

doExecute() - Method in class adams.flow.sink.RSink

Executes the flow, including reading the input and returning R's output.

doExecute() - Method in class adams.flow.source.RSource

Connects with Rserve and feeds it the script and returns the resulting data.

doExecute() - Method in class adams.flow.standalone.Rserve

Connects to Rserve and feeds it the script.

doExecute() - Method in class adams.flow.standalone.RStandalone

Connects to Rserve and feeds it the script.

doExecute() - Method in class adams.flow.transformer.RTransformer

Executes the flow, including reading the input and returning R's output.

F

FILENAME - Static variable in class adams.core.RProjectHelper

the props file.

FILENAME - Static variable in class adams.gui.core.RSyntaxEditorPanel

the props file with the style definitions.

G

generates() - Method in class adams.flow.source.RSource

Returns the datatype this flow is set to return.

generates() - Method in class adams.flow.transformer.RTransformer

List of classes this flow can return.

getDataFrameColumns() - Method in class adams.flow.source.RSource

Returns the comma-separated list of dataframe column names to retrieve only.

getDataFrameColumns() - Method in class adams.flow.transformer.RTransformer

Returns the comma-separated list of dataframe column names to retrieve only.

getFile() - Method in class adams.env.RProjectDefinition

Returns the properties file name (no path) this definition is for.

getHost() - Method in class adams.flow.standalone.Rserve

Returns the Rserve host.

getKey() - Method in class adams.env.RProjectDefinition

Returns the key this definition is for.

getPort() - Method in class adams.flow.standalone.Rserve

Returns the Rserve port.

getQuickInfo() - Method in class adams.flow.sink.RSink

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.source.RSource

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.standalone.Rserve

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.standalone.RStandalone

Returns a quick info about the actor, which will be displayed in the GUI.

getQuickInfo() - Method in class adams.flow.transformer.RTransformer

Returns a quick info about the actor, which will be displayed in the GUI.

getReturnType() - Method in class adams.flow.source.RSource

Returns the return type.

getReturnType() - Method in class adams.flow.transformer.RTransformer

Gets the type of object this flow returns.

getRExecutable() - Method in class adams.core.RProjectHelper

Returns the R executable.

getRserveHost() - Method in class adams.core.RProjectHelper

Returns the Rserve host.

getRservePort() - Method in class adams.core.RProjectHelper

Returns the Rserve port.

getScript() - Method in class adams.flow.sink.RSink

Gets the script.

getScript() - Method in class adams.flow.source.RSource

Returns to script.

getScript() - Method in class adams.flow.standalone.RStandalone

Returns the script.

getScript() - Method in class adams.flow.transformer.RTransformer

Gets the script.

getScriptTipText() - Method in class adams.core.scripting.RScript

Returns the tip text for the script.

getSingleton() - Static method in class adams.core.RProjectHelper

Returns the singleton.

getStyleProperties() - Method in class adams.gui.core.RSyntaxEditorPanel

Returns the syntax style definition.

getTextEditorPanel() - Method in class adams.core.scripting.RScript

Returns the configured text editor panel to use in the GOE.

getTitle() - Method in class adams.gui.application.RProjectSettingsPanel

The title of the preference panel.

globalInfo() - Method in class adams.flow.sink.RSink

Info about this flow.

globalInfo() - Method in class adams.flow.source.RSource

Description of the flow.

globalInfo() - Method in class adams.flow.standalone.Rserve

Overall description of this flow.

globalInfo() - Method in class adams.flow.standalone.RStandalone

Overall description of this flow.

globalInfo() - Method in class adams.flow.transformer.RTransformer

Info about this flow.

H

hasPendingOutput() - Method in class adams.flow.source.RSource

Returns true if the is pending output.

hasPendingOutput() - Method in class adams.flow.transformer.RTransformer

Returns true if the is pending output.

hostTipText() - Method in class adams.flow.standalone.Rserve

Returns the tip text for this property.

I

initGUI() - Method in class adams.gui.application.RProjectSettingsPanel

Initializes the widgets.

INPUT - Static variable in class adams.flow.sink.RSink

the placeholder for the input value.

INPUT - Static variable in class adams.flow.transformer.RTransformer

the placeholder for the input value.

isModified() - Method in class adams.core.RProjectHelper

Whether the settings got modified.

K

KEY - Static variable in class adams.env.RProjectDefinition

the key as constant.

L

listToString(RList) - Static method in class adams.core.RDataHelper

Turns an RList into a string.

load() - Method in class adams.gui.application.RProjectSettingsPanel

Loads the values from the props file and displays them.

M

m_Connection - Variable in class adams.flow.standalone.Rserve

the connection in use.

m_DataFrameColumns - Variable in class adams.flow.source.RSource

the comma-separated list of dataframe column names in case of .

m_DataFrameColumns - Variable in class adams.flow.transformer.RTransformer

the comma-separated list of dataframe column names in case of .

m_FileRExecutable - Variable in class adams.gui.application.RProjectSettingsPanel

the R executable.

m_Host - Variable in class adams.flow.standalone.Rserve

the Rserve host.

m_Modified - Variable in class adams.core.RProjectHelper

whether the settings got modified.

m_PanelParameters - Variable in class adams.gui.application.RProjectSettingsPanel

the panel for the parameters.

m_Port - Variable in class adams.flow.standalone.Rserve

the Rserve port.

m_Properties - Variable in class adams.core.RProjectHelper

the properties.

m_RConn - Variable in class adams.flow.sink.RSink

Connection to Rserve

m_RConn - Variable in class adams.flow.source.RSource

Connection to Rserve

m_RConn - Variable in class adams.flow.standalone.RStandalone

Connection to Rserve

m_RConn - Variable in class adams.flow.transformer.RTransformer

Connection to Rserve

m_returnedObject - Variable in class adams.flow.source.RSource

Object returned from r

m_returnedObject - Variable in class adams.flow.transformer.RTransformer

Object returned from r

m_returnType - Variable in class adams.flow.source.RSource

Data type of object returned from r script

m_returnType - Variable in class adams.flow.transformer.RTransformer

Data type of object returned from r script

m_Rserve - Variable in class adams.flow.sink.RSink

the Rserve actor.

m_Rserve - Variable in class adams.flow.source.RSource

the Rserve actor.

m_Rserve - Variable in class adams.flow.standalone.RStandalone

the Rserve actor.

m_Rserve - Variable in class adams.flow.transformer.RTransformer

the Rserve actor.

m_Script - Variable in class adams.flow.sink.RSink

Script to pass to r

m_Script - Variable in class adams.flow.source.RSource

Script to pass to r

m_Script - Variable in class adams.flow.standalone.RStandalone

The R script.

m_Script - Variable in class adams.flow.transformer.RTransformer

Script to pass to r

m_Shutdown - Variable in class adams.flow.standalone.Rserve

whether we need to shutdown the server.

m_Singleton - Static variable in class adams.core.RProjectHelper

the singleton.

m_SpinnerRservePort - Variable in class adams.gui.application.RProjectSettingsPanel

the Rserve port.

m_TextRserveHost - Variable in class adams.gui.application.RProjectSettingsPanel

the Rserve host.

N

newConnection() - Method in class adams.flow.standalone.Rserve

Returns a new connection to the Rserve server.

O

objectToString(Object) - Static method in class adams.core.RDataHelper

Turns an R object into a string.

output() - Method in class adams.flow.source.RSource

Turns the returned object into a token to be passed through the system.

output() - Method in class adams.flow.transformer.RTransformer

Turns the returned object into a token to be passed through the system.

P

portTipText() - Method in class adams.flow.standalone.Rserve

Returns the tip text for this property.

R

R_EXECUTABLE - Static variable in class adams.core.RProjectHelper

the R executable.

RDataHelper - Class in adams.core

Helper class for R-related stuff.

RDataHelper() - Constructor for class adams.core.RDataHelper

RDataType - Enum in adams.core

Datatype containing the types of data that R flows can return.

reload() - Method in class adams.core.RProjectHelper

Reloads the properties file.

requiresWrapper() - Method in class adams.gui.application.RProjectSettingsPanel

Returns whether the panel requires a wrapper scrollpane/panel for display.

reset() - Method in class adams.flow.sink.RSink

Ressets the members.

reset() - Method in class adams.flow.source.RSource

Ressets the members.

reset() - Method in class adams.flow.standalone.RStandalone

Ressets the members.

reset() - Method in class adams.flow.transformer.RTransformer

Ressets the members.

returnTypeTipText() - Method in class adams.flow.source.RSource

A description of the return type.

returnTypeTipText() - Method in class adams.flow.transformer.RTransformer

Tool tip about the return type.

RProjectDefinition - Class in adams.env

Definition for the R project props file.

RProjectDefinition() - Constructor for class adams.env.RProjectDefinition

RProjectHelper - Class in adams.core

Helper class for the R project setup.

RProjectSettingsPanel - Class in adams.gui.application

Panel for configuring the R-Project settings.

RProjectSettingsPanel() - Constructor for class adams.gui.application.RProjectSettingsPanel

RScript - Class in adams.core.scripting

Wrapper for a R scripts to be editable in the GOE.

RScript() - Constructor for class adams.core.scripting.RScript

Rserve - Class in adams.flow.standalone

Establishes a connection to the Rserve server.

Rserve() - Constructor for class adams.flow.standalone.Rserve

RSERVE_HOST - Static variable in class adams.core.RProjectHelper

the Rserve host to connect to.

RSERVE_PORT - Static variable in class adams.core.RProjectHelper

the Rserve port to connect on.

RSink - Class in adams.flow.sink

Carries out an r command on the token passed in.

RSink() - Constructor for class adams.flow.sink.RSink

RSource - Class in adams.flow.source

Carries out an R function on the input script and returns data of a particular type.

RSource() - Constructor for class adams.flow.source.RSource

RStandalone - Class in adams.flow.standalone

Carries out an R function on the input script.

RStandalone() - Constructor for class adams.flow.standalone.RStandalone

RSyntaxEditorPanel - Class in adams.gui.core

Loads the syntax highlighting properties file for RScript.

RSyntaxEditorPanel() - Constructor for class adams.gui.core.RSyntaxEditorPanel

RTransformer - Class in adams.flow.transformer

Carries out an r command on the token passed in.

RTransformer() - Constructor for class adams.flow.transformer.RTransformer

S

save() - Method in class adams.core.RProjectHelper

Saves the settings in the user's home directory.

scriptTipText() - Method in class adams.flow.sink.RSink

Tool tip about the script.

scriptTipText() - Method in class adams.flow.source.RSource

Returns a description of the script.

scriptTipText() - Method in class adams.flow.standalone.RStandalone

Description of the script.

scriptTipText() - Method in class adams.flow.transformer.RTransformer

Tool tip about the script.

setDataFrameColumns(String) - Method in class adams.flow.source.RSource

Sets the comma-separated list of dataframe column names to retrieve only.

setDataFrameColumns(String) - Method in class adams.flow.transformer.RTransformer

Sets the comma-separated list of dataframe column names to retrieve only.

setHost(String) - Method in class adams.flow.standalone.Rserve

Sets the Rserve host.

setPort(int) - Method in class adams.flow.standalone.Rserve

Sets the Rserve port.

setReturnType(RDataType) - Method in class adams.flow.source.RSource

Determines the return type of the flow.

setReturnType(RDataType) - Method in class adams.flow.transformer.RTransformer

Sets the type of object this flow returns.

setRExecutable(File) - Method in class adams.core.RProjectHelper

Updates the R executable.

setRserveHost(String) - Method in class adams.core.RProjectHelper

Updates the Rserve host.

setRservePort(int) - Method in class adams.core.RProjectHelper

Updates the Rserve port.

setScript(RScript) - Method in class adams.flow.sink.RSink

Sets the script.

setScript(RScript) - Method in class adams.flow.source.RSource

Sets the script to be fed to R.

setScript(RScript) - Method in class adams.flow.standalone.RStandalone

Sets the script to be fed into R.

setScript(RScript) - Method in class adams.flow.transformer.RTransformer

Sets the script.

setUp() - Method in class adams.flow.sink.RSink

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.source.RSource

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.standalone.RStandalone

Sets up the connection to Rserve.

setUp() - Method in class adams.flow.transformer.RTransformer

Sets up the connection to Rserve.

spreadsheetToDataframe(SpreadSheet) - Static method in class adams.core.RDataHelper

Turns a spreadsheet into an R dataframe.

U

update(AbstractEnvironment) - Method in class adams.env.RProjectDefinition

Updates the environment object with its definition for the props file (whether to add/replace/etc the values).

V

valueOf(String) - Static method in enum adams.core.RDataType

Returns the enum constant of this type with the specified name.

values() - Static method in enum adams.core.RDataType

Returns an array containing the constants of this enum type, in the order they are declared.

W

wrapUp() - Method in class adams.flow.sink.RSink

Closes the Rserve connection as the flow finishes.

wrapUp() - Method in class adams.flow.source.RSource

Closes the Rserve connection as the flow finishes.

wrapUp() - Method in class adams.flow.standalone.RStandalone

Closes the Rserve connection as the panel closes.

wrapUp() - Method in class adams.flow.transformer.RTransformer

Closes the Rserve connection as the flow finishes.

A C D F G H I K L M N O P R S U V W