weka.core

Class Matrix

java.lang.Object

weka.core.Matrix

All Implemented Interfaces:

Serializable, Cloneable, RevisionHandler

Direct Known Subclasses:

ConfusionMatrix

Deprecated.

Use weka.core.matrix.Matrix instead - only for backwards compatibility.

public class Matrix
extends Object
implements Cloneable, Serializable, RevisionHandler

Class for performing operations on a matrix of floating-point values.

Deprecated: Uses internally the code of the sub-package weka.core.matrix - only for backwards compatibility.

Version:

$Revision: 8034 $

Author:

Gabi Schmidberger (gabi@cs.waikato.ac.nz), Yong Wang (yongwang@cs.waikato.ac.nz), Eibe Frank (eibe@cs.waikato.ac.nz), Len Trigg (eibe@cs.waikato.ac.nz), Fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Matrix(double[][] array) Deprecated. Constructs a matrix using a given array.
Matrix(int nr, int nc) Deprecated. Constructs a matrix and initializes it with default values.
Matrix(Reader r) Deprecated. Reads a matrix from a reader.

Method Summary

Methods

Modifier and Type	Method and Description
Matrix	add(Matrix other) Deprecated. Returns the sum of this matrix with another.
void	addElement(int rowIndex, int columnIndex, double value) Deprecated. Add a value to an element.
Object	clone() Deprecated. Creates and returns a clone of this object.
void	eigenvalueDecomposition(double[][] V, double[] d) Deprecated. Performs Eigenvalue Decomposition using Householder QR Factorization Matrix must be symmetrical.
double[]	getColumn(int index) Deprecated. Gets a column of the matrix and returns it as a double array.
double	getElement(int rowIndex, int columnIndex) Deprecated. Returns the value of a cell in the matrix.
Matrix	getL() Deprecated. Returns the L part of the matrix.
String	getRevision() Deprecated. Returns the revision string.
double[]	getRow(int index) Deprecated. Gets a row of the matrix and returns it as double array.
Matrix	getU() Deprecated. Returns the U part of the matrix.
boolean	isSymmetric() Deprecated. Returns true if the matrix is symmetric.
int[]	LUDecomposition() Deprecated. Performs a LUDecomposition on the matrix.
static void	main(String[] ops) Deprecated. Main method for testing this class.
Matrix	multiply(Matrix b) Deprecated. Returns the multiplication of two matrices
int	numColumns() Deprecated. Returns the number of columns in the matrix.
int	numRows() Deprecated. Returns the number of rows in the matrix.
static Matrix	parseMatlab(String matlab) Deprecated. creates a matrix from the given Matlab string.
double[]	regression(Matrix y, double ridge) Deprecated. Performs a (ridged) linear regression.
double[]	regression(Matrix y, double[] w, double ridge) Deprecated. Performs a weighted (ridged) linear regression.
void	setColumn(int index, double[] newColumn) Deprecated. Sets a column of the matrix to the given column.
void	setElement(int rowIndex, int columnIndex, double value) Deprecated. Sets an element of the matrix to the given value.
void	setRow(int index, double[] newRow) Deprecated. Sets a row of the matrix to the given row.
void	solve(double[] bb) Deprecated. Solve A*X = B using backward substitution.
String	toMatlab() Deprecated. converts the Matrix into a single line Matlab string: matrix is enclosed by parentheses, rows are separated by semicolon and single cells by blanks, e.g., [1 2; 3 4].
String	toString() Deprecated. Converts a matrix to a string
Matrix	transpose() Deprecated. Returns the transpose of a matrix.
void	write(Writer w) Deprecated. Writes out a matrix.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Matrix

public Matrix(int nr,
      int nc)

Deprecated.

Constructs a matrix and initializes it with default values.

Parameters:

nr - the number of rows

nc - the number of columns

Matrix

public Matrix(double[][] array)
       throws Exception

Deprecated.

Constructs a matrix using a given array.

Parameters:

array - the values of the matrix

Throws:

Exception

Matrix

public Matrix(Reader r)
       throws Exception

Deprecated.

Reads a matrix from a reader. The first line in the file should contain the number of rows and columns. Subsequent lines contain elements of the matrix.

Parameters:

r - the reader containing the matrix

Throws:

Exception - if an error occurs

Method Detail

clone

public Object clone()

Deprecated.

Creates and returns a clone of this object.

Overrides:

clone in class Object

Returns:

a clone of this instance.

Throws:

Exception - if an error occurs

write

public void write(Writer w)
           throws Exception

Deprecated.

Writes out a matrix.

Parameters:

w - the output Writer

Throws:

Exception - if an error occurs

getElement

public final double getElement(int rowIndex,
                int columnIndex)

Deprecated.

Returns the value of a cell in the matrix.

Parameters:

rowIndex - the row's index

columnIndex - the column's index

Returns:

the value of the cell of the matrix

addElement

public final void addElement(int rowIndex,
              int columnIndex,
              double value)

Deprecated.

Add a value to an element.

Parameters:

rowIndex - the row's index.

columnIndex - the column's index.

value - the value to add.

numRows

public final int numRows()

Deprecated.

Returns the number of rows in the matrix.

Returns:

the number of rows

numColumns

public final int numColumns()

Deprecated.

Returns the number of columns in the matrix.

Returns:

the number of columns

setElement

public final void setElement(int rowIndex,
              int columnIndex,
              double value)

Deprecated.

Sets an element of the matrix to the given value.

Parameters:

rowIndex - the row's index

columnIndex - the column's index

value - the value

setRow

public final void setRow(int index,
          double[] newRow)

Deprecated.

Sets a row of the matrix to the given row. Performs a deep copy.

Parameters:

index - the row's index

newRow - an array of doubles

getRow

public double[] getRow(int index)

Deprecated.

Gets a row of the matrix and returns it as double array.

Parameters:

index - the row's index

Returns:

an array of doubles

getColumn

public double[] getColumn(int index)

Deprecated.

Gets a column of the matrix and returns it as a double array.

Parameters:

index - the column's index

Returns:

an array of doubles

setColumn

public final void setColumn(int index,
             double[] newColumn)

Deprecated.

Sets a column of the matrix to the given column. Performs a deep copy.

Parameters:

index - the column's index

newColumn - an array of doubles

toString

public String toString()

Deprecated.

Converts a matrix to a string

Overrides:

toString in class Object

Returns:

the converted string

add

public final Matrix add(Matrix other)

Deprecated.

Returns the sum of this matrix with another.

Returns:

a matrix containing the sum.

transpose

public final Matrix transpose()

Deprecated.

Returns the transpose of a matrix.

Returns:

the transposition of this instance.

isSymmetric

public boolean isSymmetric()

Deprecated.

Returns true if the matrix is symmetric.

Returns:

boolean true if matrix is symmetric.

multiply

public final Matrix multiply(Matrix b)

Deprecated.

Returns the multiplication of two matrices

Parameters:

b - the multiplication matrix

Returns:

the product matrix

regression

public final double[] regression(Matrix y,
                  double ridge)

Deprecated.

Performs a (ridged) linear regression.

Parameters:

y - the dependent variable vector

ridge - the ridge parameter

Returns:

the coefficients

Throws:

IllegalArgumentException - if not successful

regression

public final double[] regression(Matrix y,
                  double[] w,
                  double ridge)

Deprecated.

Performs a weighted (ridged) linear regression.

Parameters:

y - the dependent variable vector

w - the array of data point weights

ridge - the ridge parameter

Returns:

the coefficients

Throws:

IllegalArgumentException - if the wrong number of weights were provided.

getL

public Matrix getL()
            throws Exception

Deprecated.

Returns the L part of the matrix. This does only make sense after LU decomposition.

Returns:

matrix with the L part of the matrix;

Throws:

Exception

See Also:

LUDecomposition()

getU

public Matrix getU()
            throws Exception

Deprecated.

Returns the U part of the matrix. This does only make sense after LU decomposition.

Returns:

matrix with the U part of a matrix;

Throws:

Exception

See Also:

LUDecomposition()

LUDecomposition

public int[] LUDecomposition()
                      throws Exception

Deprecated.

Performs a LUDecomposition on the matrix. It changes the matrix into its LU decomposition.

Returns:

the indices of the row permutation

Throws:

Exception

solve

public void solve(double[] bb)
           throws Exception

Deprecated.

Solve A*X = B using backward substitution. A is current object (this). Note that this matrix will be changed! B parameter bb. X returned in parameter bb.

Parameters:

bb - first vector B in above equation then X in same equation.

Throws:

Exception

eigenvalueDecomposition

public void eigenvalueDecomposition(double[][] V,
                           double[] d)
                             throws Exception

Deprecated.

Performs Eigenvalue Decomposition using Householder QR Factorization Matrix must be symmetrical. Eigenvectors are return in parameter V, as columns of the 2D array. (Real parts of) Eigenvalues are returned in parameter d.

Parameters:

V - double array in which the eigenvectors are returned

d - array in which the eigenvalues are returned

Throws:

Exception - if matrix is not symmetric

toMatlab

public String toMatlab()

Deprecated.

converts the Matrix into a single line Matlab string: matrix is enclosed by parentheses, rows are separated by semicolon and single cells by blanks, e.g., [1 2; 3 4].

Returns:

the matrix in Matlab single line format

parseMatlab

public static Matrix parseMatlab(String matlab)
                          throws Exception

Deprecated.

creates a matrix from the given Matlab string.

Parameters:

matlab - the matrix in matlab format

Returns:

the matrix represented by the given string

Throws:

Exception

See Also:

toMatlab()

getRevision

public String getRevision()

Deprecated.

Returns the revision string.

Specified by:

getRevision in interface RevisionHandler

Returns:

the revision

main

public static void main(String[] ops)

Deprecated.

Main method for testing this class.