Index (canova-api 0.0.0.15 API)

A B C D E F G H I J K L M N O P R S T U V W X Y Z

A

able(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Wraps an iterator as an iterable
abs(double) - Static method in class org.canova.api.berkeley.SloppyMath
accept(T) - Method in interface org.canova.api.berkeley.Filter
accept(String) - Method in class org.canova.api.io.filters.RandomPathFilter
accept(Class<?>) - Method in interface org.canova.api.io.serializers.Serialization: Allows clients to test whether this Serialization supports the given class.
add(E, double) - Method in class org.canova.api.berkeley.PriorityQueue
add(Object, int) - Method in class org.canova.api.util.Index
add(Object) - Method in class org.canova.api.util.Index
add(Pair<K, V>) - Method in class org.canova.api.util.MultiDimensionalSet: Adds the specified element to this applyTransformToDestination if it is not already present (optional operation).
add(K, V) - Method in class org.canova.api.util.MultiDimensionalSet
addAll(Collection<? extends Pair<K, V>>) - Method in class org.canova.api.util.MultiDimensionalSet: Adds all of the elements in the specified collection to this applyTransformToDestination if they're not already present (optional operation).
addDefaultResource(String) - Static method in class org.canova.api.conf.Configuration: Add a default resource.
addExp(float[], int) - Static method in class org.canova.api.berkeley.SloppyMath
addExp_Old(float[]) - Static method in class org.canova.api.berkeley.SloppyMath: Similar to logAdd, but without the final log.
addField(String...) - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection.Builder
addField(Writable, String...) - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection.Builder
addResource(String) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
addResource(URL) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
addResource(InputStream) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
adjustedrSquared(double, int, int) - Static method in class org.canova.api.util.MathUtils: This calculates the adjusted r^2 including degrees of freedom.
allMatches(String, String) - Static method in class org.canova.api.berkeley.StringUtils
allowFormat - Variable in class org.canova.api.split.FileSplit
append(byte[], int, int) - Method in class org.canova.api.io.data.Text: Append a range of bytes to the end of the given text
append(byte[], int, int) - Method in class org.canova.api.records.Buffer: Append specified bytes to the buffer.
append(byte[]) - Method in class org.canova.api.records.Buffer: Append specified bytes to the buffer
APPEND - Static variable in interface org.canova.api.records.writer.RecordWriter
APPEND_LABEL - Static variable in interface org.canova.api.records.reader.RecordReader
appendLabel - Variable in class org.canova.api.records.reader.impl.FileRecordReader
approxEquals(Counter<E>, double) - Method in class org.canova.api.berkeley.Counter
approxExp(double) - Static method in class org.canova.api.berkeley.SloppyMath
approxLog(double) - Static method in class org.canova.api.berkeley.SloppyMath
approxPow(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
ArchiveUtils - Class in org.canova.api.util
ArchiveUtils() - Constructor for class org.canova.api.util.ArchiveUtils
argMax() - Method in class org.canova.api.berkeley.Counter: Finds the key with maximum count.
argMax() - Method in class org.canova.api.berkeley.CounterMap: Finds the key with maximum count.
argsToMap(String[]) - Static method in class org.canova.api.berkeley.StringUtils: Parses command line arguments into a Map.
argsToMap(String[], Map<String, Integer>) - Static method in class org.canova.api.berkeley.StringUtils: Parses command line arguments into a Map.
argsToProperties(String[]) - Static method in class org.canova.api.berkeley.StringUtils
argsToProperties(String[], Map) - Static method in class org.canova.api.berkeley.StringUtils: Analagous to StringUtils.argsToMap(java.lang.String[]).
arrayToString(String[]) - Static method in class org.canova.api.util.StringUtils: Given an array of strings, return a comma-separated list of its elements.
ArrayWritable - Class in org.canova.api.writable: A Writable to basically wrap an array of sorts.
ArrayWritable() - Constructor for class org.canova.api.writable.ArrayWritable
asCounter() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a counter whose keys are the elements in this priority queue, and whose counts are the priorities in this queue.
asMinPriorityQueue() - Method in class org.canova.api.berkeley.Counter: Warning: all priorities are the negative of their counts in the counter here
asPriorityQueue() - Method in class org.canova.api.berkeley.Counter: Builds a priority queue whose elements are the counter's elements, and whose priorities are those elements' counts in the counter.

B

BalancedPathFilter - Class in org.canova.api.io.filters
BalancedPathFilter(Random, String[], PathLabelGenerator) - Constructor for class org.canova.api.io.filters.BalancedPathFilter
BalancedPathFilter(Random, String[], PathLabelGenerator, int, int, int) - Constructor for class org.canova.api.io.filters.BalancedPathFilter
BaseInputFormat - Class in org.canova.api.formats.input
BaseInputFormat() - Constructor for class org.canova.api.formats.input.BaseInputFormat
BaseInputSplit - Class in org.canova.api.split: Base input split
BaseInputSplit() - Constructor for class org.canova.api.split.BaseInputSplit
bernoullis(double, double, double) - Static method in class org.canova.api.util.MathUtils: This will return the bernoulli trial for the given event.
BinaryComparable - Class in org.canova.api.io: Interface supported by org.apache.hadoop.io.WritableComparable types supporting ordering/permutation by a representative set of bytes.
BinaryComparable() - Constructor for class org.canova.api.io.BinaryComparable
binomial(RandomGenerator, int, double) - Static method in class org.canova.api.util.MathUtils: Generates a binomial distributed number using the given rng
BooleanWritable - Class in org.canova.api.io.data: A WritableComparable for booleans.
BooleanWritable() - Constructor for class org.canova.api.io.data.BooleanWritable
BooleanWritable(boolean) - Constructor for class org.canova.api.io.data.BooleanWritable
BooleanWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for BooleanWritable.
Buffer - Class in org.canova.api.records: A byte sequence that is used as a Java native type for buffer.
Buffer() - Constructor for class org.canova.api.records.Buffer: Create a zero-count sequence.
Buffer(byte[]) - Constructor for class org.canova.api.records.Buffer: Create a Buffer using the byte array as the initial value.
Buffer(byte[], int, int) - Constructor for class org.canova.api.records.Buffer: Create a Buffer using the byte range as the initial value.
build() - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection.Builder
buildCounter(MapFactory<V, Double>) - Method in class org.canova.api.berkeley.CounterMap
Builder() - Constructor for class org.canova.api.records.reader.impl.jackson.FieldSelection.Builder
buildMap() - Method in class org.canova.api.berkeley.MapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.HashMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.IdentityHashMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.TreeMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.WeakHashMapFactory
byteDesc(long) - Static method in class org.canova.api.util.StringUtils: Return an abbreviated English-language desc of the byte length
bytesToCodePoint(ByteBuffer) - Static method in class org.canova.api.io.data.Text: Returns the next code point at the current position in the buffer.
byteToHexString(byte[], int, int) - Static method in class org.canova.api.util.StringUtils: Given an array of bytes it will convert the bytes to a hex string representation of the bytes
byteToHexString(byte[]) - Static method in class org.canova.api.util.StringUtils: Same as byteToHexString(bytes, 0, bytes.length).
ByteWritable - Class in org.canova.api.io.data: A WritableComparable for a single byte.
ByteWritable() - Constructor for class org.canova.api.io.data.ByteWritable
ByteWritable(byte) - Constructor for class org.canova.api.io.data.ByteWritable
ByteWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for ByteWritable.

C

call(I) - Method in interface org.canova.api.berkeley.MyMethod
CanovaException - Exception in org.canova.api.exceptions: Canova exception
CanovaException() - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String, Throwable) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(Throwable) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.exceptions.CanovaException
capitalize(String) - Static method in class org.canova.api.berkeley.StringUtils: Uppercases the first character of a string.
charAt(int) - Method in class org.canova.api.io.data.Text: Returns the Unicode Scalar Value (32-bit integer value) for the character at position.
chiSquare2by2(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a 2x2 chi-square value.
clamp(int, int, int) - Static method in class org.canova.api.util.MathUtils: Clamps the value to a discrete value
CLASSIFICATION - Static variable in interface org.canova.api.records.reader.LibSvm
ClassPathResource - Class in org.canova.api.util: Simple utility class used to get access to files at the classpath, or packed into jar.
ClassPathResource(String) - Constructor for class org.canova.api.util.ClassPathResource: Builds new ClassPathResource object
clear() - Method in class org.canova.api.berkeley.Counter
clear() - Method in class org.canova.api.conf.Configuration: Clears all keys from the configuration.
clear() - Method in class org.canova.api.io.data.Text: Clear the string to empty.
clear() - Method in class org.canova.api.util.MultiDimensionalMap: Removes all of the mappings from this map (optional operation).
clear() - Method in class org.canova.api.util.MultiDimensionalSet: Removes all of the elements from this applyTransformToDestination (optional operation).
clone() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a clone of this priority queue.
clone(T, Configuration) - Static method in class org.canova.api.io.WritableUtils: Make a copy of a writable object using serialization to a buffer.
clone() - Method in class org.canova.api.records.Buffer
cloneWritableInto(Writable, Writable) - Static method in class org.canova.api.util.ReflectionUtils: Deprecated.
close() - Method in interface org.canova.api.io.serializers.Deserializer: Close the underlying input stream and clear up any resources.
close() - Method in interface org.canova.api.io.serializers.Serializer: Close the underlying output stream and clear up any resources.
close() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
close() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
close() - Method in class org.canova.api.records.reader.impl.FileRecordReader
close() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
close() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
close() - Method in class org.canova.api.records.reader.impl.LineRecordReader
close() - Method in class org.canova.api.records.writer.impl.FileRecordWriter
close() - Method in interface org.canova.api.records.writer.RecordWriter: Close the recod reader
CollectionInputSplit - Class in org.canova.api.split: A simple InputSplit based on a collection of URIs
CollectionInputSplit(Collection<URI>) - Constructor for class org.canova.api.split.CollectionInputSplit
CollectionRecordReader - Class in org.canova.api.records.reader.impl: Collection record reader.
CollectionRecordReader(Collection<? extends Collection<Writable>>) - Constructor for class org.canova.api.records.reader.impl.CollectionRecordReader
combination(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the combination of n choose r
COMMA - Static variable in class org.canova.api.util.StringUtils
Comparator() - Constructor for class org.canova.api.io.data.BooleanWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.ByteWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.DoubleWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.FloatWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.IntWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.LongWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.Text.Comparator
compare(Pair<F, S>, Pair<F, S>) - Method in class org.canova.api.berkeley.Pair.DefaultLexicographicPairComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.FirstComparator
compare(Pair<F, S>, Pair<F, S>) - Method in class org.canova.api.berkeley.Pair.LexicographicPairComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.ReverseFirstComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.ReverseSecondComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.SecondComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.BooleanWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.ByteWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.DoubleWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.FloatWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.IntWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.LongWritable.Comparator
compare(WritableComparable, WritableComparable) - Method in class org.canova.api.io.data.LongWritable.DecreasingComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.LongWritable.DecreasingComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.Text.Comparator
compare(byte[], int, int, byte[], int, int) - Method in interface org.canova.api.io.RawComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.WritableComparator: Optimization hook.
compare(WritableComparable, WritableComparable) - Method in class org.canova.api.io.WritableComparator: Compare two WritableComparables.
compare(Object, Object) - Method in class org.canova.api.io.WritableComparator
compareBytes(byte[], int, int, byte[], int, int) - Static method in class org.canova.api.io.WritableComparator: Lexicographic order of binary data.
compareBytes(byte[], int, int, byte[], int, int) - Static method in class org.canova.api.records.Utils: Lexicographic order of binary data.
compareTo(Pair<F, S>) - Method in class org.canova.api.berkeley.Pair: Compares this object with the specified object for order.
compareTo(BinaryComparable) - Method in class org.canova.api.io.BinaryComparable: Compare bytes from {#getBytes()}.
compareTo(byte[], int, int) - Method in class org.canova.api.io.BinaryComparable: Compare bytes from {#getBytes()} to those provided.
compareTo(Object) - Method in class org.canova.api.io.data.BooleanWritable
compareTo(Object) - Method in class org.canova.api.io.data.ByteWritable: Compares two ByteWritables.
compareTo(Object) - Method in class org.canova.api.io.data.DoubleWritable
compareTo(Object) - Method in class org.canova.api.io.data.FloatWritable: Compares two FloatWritables.
compareTo(Object) - Method in class org.canova.api.io.data.IntWritable: Compares two IntWritables.
compareTo(Object) - Method in class org.canova.api.io.data.LongWritable: Compares two LongWritables.
compareTo(Object) - Method in class org.canova.api.io.data.NullWritable
compareTo(Object) - Method in class org.canova.api.records.Buffer: Define the sort order of the Buffer.
ComposableRecordReader - Class in org.canova.api.records.reader.impl: RecordReader for each pipeline.
ComposableRecordReader(RecordReader...) - Constructor for class org.canova.api.records.reader.impl.ComposableRecordReader
concat(Iterable<Iterator<? extends T>>) - Static method in class org.canova.api.berkeley.Iterators
concat(Iterator<? extends T>...) - Static method in class org.canova.api.berkeley.Iterators
concat(Iterable<T>, Iterable<T>) - Static method in class org.canova.api.berkeley.Iterators
concurrentSkipListSet() - Static method in class org.canova.api.util.MultiDimensionalSet
conf - Variable in class org.canova.api.records.reader.impl.FileRecordReader
conf - Variable in class org.canova.api.records.reader.impl.LineRecordReader
conf - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
Configurable - Interface in org.canova.api.conf: Something that may be configured with a Configuration.
Configuration - Class in org.canova.api.conf: Provides access to configuration parameters.
Configuration() - Constructor for class org.canova.api.conf.Configuration: A new configuration.
Configuration(boolean) - Constructor for class org.canova.api.conf.Configuration: A new configuration where the behavior of reading from the default resources can be turned off.
Configuration(Configuration) - Constructor for class org.canova.api.conf.Configuration: A new configuration with the same settings cloned from another.
Configuration.IntegerRanges - Class in org.canova.api.conf: A class that represents a set of positive integer ranges.
Configured - Class in org.canova.api.conf: Base class for things that may be configured with a Configuration.
Configured() - Constructor for class org.canova.api.conf.Configured: Construct a Configured.
Configured(Configuration) - Constructor for class org.canova.api.conf.Configured: Construct a Configured.
contains(K, T) - Method in class org.canova.api.util.MultiDimensionalMap
contains(Object) - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains the specified element.
contains(K, V) - Method in class org.canova.api.util.MultiDimensionalSet
containsAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains all of the elements of the specified collection.
containsKey(E) - Method in class org.canova.api.berkeley.Counter: Returns whether the counter contains the given key.
containsKey(K) - Method in class org.canova.api.berkeley.CounterMap
containsKey(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map contains a mapping for the specified key.
containsValue(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map maps one or more keys to the specified value.
convert(Writable) - Method in class org.canova.api.io.converters.DoubleWritableConverter
convert(Writable) - Method in class org.canova.api.io.converters.FloatWritableConverter
convert(Writable) - Method in class org.canova.api.io.converters.LabelWriterConverter
convert(Writable) - Method in class org.canova.api.io.converters.SelfWritableConverter
convert(Writable) - Method in interface org.canova.api.io.WritableConverter: Convert a writable to another kind of writable
coordSplit(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the coordinate split in a list of coordinates such that the values for ret[0] are the x values and ret[1] are the y values
coordSplit(List<Double>) - Static method in class org.canova.api.util.MathUtils: This returns the coordinate split in a list of coordinates such that the values for ret[0] are the x values and ret[1] are the y values
copy(byte[], int, int) - Method in class org.canova.api.records.Buffer: Copy the specified byte array to the Buffer.
copy(Configuration, T, T) - Static method in class org.canova.api.util.ReflectionUtils: Make a copy of the writable object using serialization to a buffer
correlation(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Returns the correlation coefficient of two double vectors.
Counter<E> - Class in org.canova.api.berkeley: A map from objects to doubles.
Counter() - Constructor for class org.canova.api.berkeley.Counter
Counter(boolean) - Constructor for class org.canova.api.berkeley.Counter
Counter(MapFactory<E, Double>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Map<? extends E, Double>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Counter<? extends E>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Collection<? extends E>) - Constructor for class org.canova.api.berkeley.Counter
CounterMap<K,V> - Class in org.canova.api.berkeley: Maintains counts of (key, value) pairs.
CounterMap(CounterMap<K, V>) - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap() - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap(MapFactory<K, Counter<V>>, MapFactory<V, Double>) - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap(boolean) - Constructor for class org.canova.api.berkeley.CounterMap
create(URI) - Method in interface org.canova.api.records.reader.factory.RecordReaderFactory: Creates instance of RecordReader
create(URI) - Method in interface org.canova.api.records.reader.factory.RecordWriterFactory
createReader(InputSplit) - Method in class org.canova.api.formats.input.BaseInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.LibSvmInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.LineInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.LineInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.MatlabInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.MatlabInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.SVMLightInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.SVMLightInputFormat
createReader(InputSplit, Configuration) - Method in interface org.canova.api.formats.input.InputFormat: Creates a reader from an input split
createReader(InputSplit) - Method in interface org.canova.api.formats.input.InputFormat: Creates a reader from an input split
createVector(Object[]) - Method in interface org.canova.api.vector.Vectorizer: Create a vector based on the given arguments
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.CSVOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.LibSvmOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.LineOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.SVMLightOutputFormat
createWriter(Configuration) - Method in interface org.canova.api.formats.output.OutputFormat: Create a record writer
CSVInputFormat - Class in org.canova.api.formats.input.impl: Line input format creates an @link{LineRecordReader}
CSVInputFormat() - Constructor for class org.canova.api.formats.input.impl.CSVInputFormat
CSVOutputFormat - Class in org.canova.api.formats.output.impl: Creates an @link{CSVRecordWriter}
CSVOutputFormat() - Constructor for class org.canova.api.formats.output.impl.CSVOutputFormat
CSVRecordReader - Class in org.canova.api.records.reader.impl: Simple csv record reader.
CSVRecordReader(int) - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader: Skip first n lines
CSVRecordReader(int, String) - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader: Skip lines and use delimiter
CSVRecordReader() - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader
CSVRecordWriter - Class in org.canova.api.records.writer.impl: Csv record writer
CSVRecordWriter() - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(File, boolean, Charset, String) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVSequenceRecordReader - Class in org.canova.api.records.reader.impl: CSV Sequence Record Reader This reader is indended to read sequences of data in CSV format, where each sequence is defined in its own file (and there are multiple files) Each line in the file represents one time step
CSVSequenceRecordReader() - Constructor for class org.canova.api.records.reader.impl.CSVSequenceRecordReader
CSVSequenceRecordReader(int) - Constructor for class org.canova.api.records.reader.impl.CSVSequenceRecordReader
CSVSequenceRecordReader(int, String) - Constructor for class org.canova.api.records.reader.impl.CSVSequenceRecordReader
currentFile - Variable in class org.canova.api.records.reader.impl.FileRecordReader

D

DataInputBuffer - Class in org.canova.api.io: A reusable DataInput implementation that reads from an in-memory buffer.
DataInputBuffer() - Constructor for class org.canova.api.io.DataInputBuffer: Constructs a new empty buffer.
DataOutputBuffer - Class in org.canova.api.io: A reusable DataOutput implementation that writes to an in-memory buffer.
DataOutputBuffer() - Constructor for class org.canova.api.io.DataOutputBuffer: Constructs a new empty buffer.
DataOutputBuffer(int) - Constructor for class org.canova.api.io.DataOutputBuffer
decode(byte[]) - Static method in class org.canova.api.io.data.Text: Converts the provided byte array to a String using the UTF-8 encoding.
decode(byte[], int, int) - Static method in class org.canova.api.io.data.Text
decode(byte[], int, int, boolean) - Static method in class org.canova.api.io.data.Text: Converts the provided byte array to a String using the UTF-8 encoding.
decodeVIntSize(byte) - Static method in class org.canova.api.io.WritableUtils: Parse the first byte of a vint/vlong to determine the number of bytes
DecreasingComparator() - Constructor for class org.canova.api.io.data.LongWritable.DecreasingComparator
DEFAULT_CHARSET - Static variable in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
DEFAULT_CHARSET - Static variable in class org.canova.api.records.writer.impl.FileRecordWriter
DEFAULT_DELIMITER - Static variable in class org.canova.api.records.writer.impl.CSVRecordWriter
DEFAULT_ERROR_HANDLING - Static variable in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
DEFAULT_MISSING_VALUE - Static variable in class org.canova.api.records.reader.impl.jackson.FieldSelection
DefaultFactory(Class) - Constructor for class org.canova.api.berkeley.Factory.DefaultFactory
DefaultLexicographicPairComparator() - Constructor for class org.canova.api.berkeley.Pair.DefaultLexicographicPairComparator
define(Class, WritableComparator) - Static method in class org.canova.api.io.WritableComparator: Register an optimized comparator for a WritableComparable implementation.
DELIMITER - Static variable in class org.canova.api.records.reader.impl.CSVRecordReader
deserialize(T) - Method in interface org.canova.api.io.serializers.Deserializer: Deserialize the next object from the underlying input stream.
Deserializer<T> - Interface in org.canova.api.io.serializers: Provides a facility for deserializing objects of type from an InputStream.
determinationCoefficient(double[], double[], int) - Static method in class org.canova.api.util.MathUtils: This returns the determination coefficient of two vectors given a length
difference(Counter<E>) - Method in class org.canova.api.berkeley.Counter
difference(Collection<? extends T>, Collection<? extends T>) - Static method in class org.canova.api.util.SetUtils: Return is s1 \ s2
discretize(double, double, double, int) - Static method in class org.canova.api.util.MathUtils: Discretize the given value
displayByteArray(byte[]) - Static method in class org.canova.api.io.WritableUtils
distanceFinderZValue(double[]) - Static method in class org.canova.api.util.MathUtils: This will translate a vector in to an equivalent integer
doInitialize(InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
done() - Method in interface org.canova.api.records.Index
dotProduct(Counter<E>) - Method in class org.canova.api.berkeley.Counter
DoubleWritable - Class in org.canova.api.io.data: Writable for Double values.
DoubleWritable() - Constructor for class org.canova.api.io.data.DoubleWritable
DoubleWritable(double) - Constructor for class org.canova.api.io.data.DoubleWritable
DoubleWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for DoubleWritable.
DoubleWritableConverter - Class in org.canova.api.io.converters: Convert a writable to a double
DoubleWritableConverter() - Constructor for class org.canova.api.io.converters.DoubleWritableConverter
dumpConfiguration(Configuration, Writer) - Static method in class org.canova.api.conf.Configuration: Writes out all the parameters and their properties (final and resource) to the given Writer The format of the output would be { "properties" : [ {key1,value1,key1.isFinal,key1.resource}, {key2,value2, key2.isFinal,key2.resource}...

E

editDistance(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the Levenshtein (edit) distance of the two given Strings.
emptyIterator() - Static method in class org.canova.api.berkeley.Iterators
emptyStringArray - Static variable in class org.canova.api.util.StringUtils
encode(String) - Static method in class org.canova.api.io.data.Text: Converts the provided String to bytes using the UTF-8 encoding.
encode(String, boolean) - Static method in class org.canova.api.io.data.Text: Converts the provided String to bytes using the UTF-8 encoding.
encoding - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
ensureCounter(K) - Method in class org.canova.api.berkeley.CounterMap
entropy(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the entropy (information gain, or uncertainty of a random variable).
Entry(K, T, V) - Constructor for class org.canova.api.util.MultiDimensionalMap.Entry
entrySet() - Method in class org.canova.api.berkeley.Counter
entrySet() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Set view of the mappings contained in this map.
equals(Object) - Method in class org.canova.api.berkeley.Pair
equals(Object) - Method in class org.canova.api.berkeley.Triple
equals(Object) - Method in class org.canova.api.io.BinaryComparable: Return true if bytes from {#getBytes()} match.
equals(Object) - Method in class org.canova.api.io.data.BooleanWritable
equals(Object) - Method in class org.canova.api.io.data.ByteWritable: Returns true iff o is a ByteWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.DoubleWritable: Returns true iff o is a DoubleWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.FloatWritable: Returns true iff o is a FloatWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.IntWritable: Returns true iff o is a IntWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.LongWritable: Returns true iff o is a LongWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.NullWritable
equals(Object) - Method in class org.canova.api.io.data.Text: Returns true iff o is a Text with the same contents.
equals(Object) - Method in class org.canova.api.records.Buffer
equals(Object) - Method in class org.canova.api.util.MultiDimensionalMap
errorFor(double, double) - Static method in class org.canova.api.util.MathUtils
ESCAPE_CHAR - Static variable in class org.canova.api.util.StringUtils
escapeHTML(String) - Static method in class org.canova.api.util.StringUtils: Escapes HTML Special characters present in the string.
escapeString(String, char[], char) - Static method in class org.canova.api.berkeley.StringUtils
escapeString(String) - Static method in class org.canova.api.util.StringUtils: Escape commas in the string using the default escape char
escapeString(String, char, char) - Static method in class org.canova.api.util.StringUtils: Escape charToEscape in the string with the escape char escapeChar
escapeString(String, char, char[]) - Static method in class org.canova.api.util.StringUtils
euclideanDistance(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This returns the euclidean distance of two vectors sum(i=1,n) (q_i - p_i)^2
euclideanDistance(float[], float[]) - Static method in class org.canova.api.util.MathUtils: This returns the euclidean distance of two vectors sum(i=1,n) (q_i - p_i)^2
exactBinomial(int, int, double) - Static method in class org.canova.api.berkeley.SloppyMath: Find a one tailed exact binomial test probability.
exp(double) - Static method in class org.canova.api.berkeley.SloppyMath
extensions - Variable in class org.canova.api.io.filters.RandomPathFilter

F

factorial(double) - Static method in class org.canova.api.util.MathUtils: This will return the factorial of the given number n.
Factory<T> - Interface in org.canova.api.berkeley
Factory.DefaultFactory<T> - Class in org.canova.api.berkeley
FieldSelection - Class in org.canova.api.records.reader.impl.jackson: FieldSelection is used in conjunction with the JacksonRecordReader (and the subclasses).
FieldSelection.Builder - Class in org.canova.api.records.reader.impl.jackson
fileNameClean(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns a "clean" version of the given filename in which spaces have been converted to dashes and all non-alphaneumeric chars are underscores.
FileRecordReader - Class in org.canova.api.records.reader.impl: File reader/writer
FileRecordReader() - Constructor for class org.canova.api.records.reader.impl.FileRecordReader
FileRecordWriter - Class in org.canova.api.records.writer.impl: Write to files.
FileRecordWriter() - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(File, boolean, Charset) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter: Initialized based on configuration Set the following attributes in the conf:
FileSplit - Class in org.canova.api.split: File input split.
FileSplit(File, String[], boolean, Random, boolean) - Constructor for class org.canova.api.split.FileSplit
FileSplit(File) - Constructor for class org.canova.api.split.FileSplit
FileSplit(File, Random) - Constructor for class org.canova.api.split.FileSplit
FileSplit(File, String[]) - Constructor for class org.canova.api.split.FileSplit
FileSplit(File, String[], Random) - Constructor for class org.canova.api.split.FileSplit
FileSplit(File, String[], boolean) - Constructor for class org.canova.api.split.FileSplit
fillList(Iterator<? extends T>, List<T>) - Static method in class org.canova.api.berkeley.Iterators
fillList(Iterator<? extends T>) - Static method in class org.canova.api.berkeley.Iterators
Filter<T> - Interface in org.canova.api.berkeley: Filters are boolean functions which accept or reject items.
filter(Iterator<T>, Filter<T>) - Static method in class org.canova.api.berkeley.Iterators
filter(URI[]) - Method in class org.canova.api.io.filters.BalancedPathFilter
filter(URI[]) - Method in interface org.canova.api.io.filters.PathFilter
filter(URI[]) - Method in class org.canova.api.io.filters.RandomPathFilter
FilteredIterator(Filter<T>, Iterator<T>) - Constructor for class org.canova.api.berkeley.Iterators.FilteredIterator
FilteredIterator(Filter<T>, Iterable<T>) - Constructor for class org.canova.api.berkeley.Iterators.FilteredIterator
find(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression can be found inside this String.
find(String) - Method in class org.canova.api.io.data.Text
find(String, int) - Method in class org.canova.api.io.data.Text: Finds any occurence of what in the backing buffer, starting as position start.
findNext(String, char, char, int, StringBuilder) - Static method in class org.canova.api.util.StringUtils: Finds the first occurrence of the separator character ignoring the escaped separators starting from the index.
FirstComparator() - Constructor for class org.canova.api.berkeley.Pair.FirstComparator
fit(RecordReader) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fit(RecordReader, Vectorizer.RecordCallBack) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fitTransform(RecordReader) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fitTransform(RecordReader, Vectorizer.RecordCallBack) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
FloatWritable - Class in org.canova.api.io.data: A WritableComparable for floats.
FloatWritable() - Constructor for class org.canova.api.io.data.FloatWritable
FloatWritable(float) - Constructor for class org.canova.api.io.data.FloatWritable
FloatWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for FloatWritable.
FloatWritableConverter - Class in org.canova.api.io.converters: Convert a writable to a double
FloatWritableConverter() - Constructor for class org.canova.api.io.converters.FloatWritableConverter
formatPercent(double, int) - Static method in class org.canova.api.util.StringUtils: Format a percentage for presentation to the user.
formatTime(long) - Static method in class org.canova.api.util.StringUtils: Given the time in long milliseconds, returns a String in the format Xhrs, Ymins, Z sec.
formatTimeDiff(long, long) - Static method in class org.canova.api.util.StringUtils: Given a finish and start time in long milliseconds, returns a String in the format Xhrs, Ymins, Z sec, for the time difference between two times.
fromString(String, String) - Static method in class org.canova.api.util.MathUtils: This will take a given string and separator and convert it to an equivalent double array.

G

generateUniform(int) - Static method in class org.canova.api.util.MathUtils: This will generate a series of uniformally distributed numbers between l times
get(String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property, null if no such property exists.
get(String, String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property.
get() - Method in class org.canova.api.io.data.BooleanWritable: Returns the value of the BooleanWritable
get() - Method in class org.canova.api.io.data.ByteWritable: Return the value of this ByteWritable.
get() - Method in class org.canova.api.io.data.DoubleWritable
get() - Method in class org.canova.api.io.data.FloatWritable: Return the value of this FloatWritable.
get() - Method in class org.canova.api.io.data.IntWritable: Return the value of this IntWritable.
get() - Method in class org.canova.api.io.data.LongWritable: Return the value of this LongWritable.
get(Class<? extends WritableComparable>) - Static method in class org.canova.api.io.WritableComparator: Get a comparator for a WritableComparable implementation.
get() - Method in class org.canova.api.records.Buffer: Get the data from the Buffer.
get(int) - Method in class org.canova.api.util.Index
get(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns the value to which the specified key is mapped, or null if this map contains no mapping for the key.
get(K, T) - Method in class org.canova.api.util.MultiDimensionalMap
getBoolean(String, boolean) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a boolean.
getBytes() - Method in class org.canova.api.io.BinaryComparable: Return representative byte array for this instance.
getBytes() - Method in class org.canova.api.io.data.Text: Returns the raw bytes; however, only data up to Text.getLength() is valid.
getCapacity() - Method in class org.canova.api.records.Buffer: Get the capacity, which is the maximum count that could handled without resizing the backing storage.
getClass(String, Class<?>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Class.
getClass(String, Class<? extends U>, Class<U>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Class implementing the interface specified by xface.
getClass(T) - Static method in class org.canova.api.util.ReflectionUtils: Return the correctly-typed Class of the given object.
getClassByName(String) - Method in class org.canova.api.conf.Configuration: Load a class by name.
getClasses(String, Class<?>...) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as an array of Class.
getClassLoader() - Method in class org.canova.api.conf.Configuration: Get the ClassLoader for this job.
getConf() - Method in interface org.canova.api.conf.Configurable: Return the configuration used by this object.
getConf() - Method in class org.canova.api.conf.Configured
getConf() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.FileRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.LineRecordReader
getConf() - Method in class org.canova.api.records.writer.impl.FileRecordWriter
getConfResourceAsInputStream(String) - Method in class org.canova.api.conf.Configuration: Get an input stream attached to the configuration resource with the given name.
getConfResourceAsReader(String) - Method in class org.canova.api.conf.Configuration: Get a Reader attached to the configuration resource with the given name.
getCount(E) - Method in class org.canova.api.berkeley.Counter: Get the count of the element, or zero if the element is not in the counter.
getCount(K, V) - Method in class org.canova.api.berkeley.CounterMap: Gets the count of the given (key, value) entry, or zero if that entry is not present.
getCount(K) - Method in class org.canova.api.berkeley.CounterMap: Gets the total count of the given key, or zero if that key is not present.
getCount() - Method in class org.canova.api.records.Buffer: Get the current count of the buffer.
getCounter(K) - Method in class org.canova.api.berkeley.CounterMap: Gets the sub-counter for the given key.
getCounters() - Method in class org.canova.api.berkeley.CounterMap
getCurrentLabel() - Method in class org.canova.api.records.reader.impl.FileRecordReader: Return the current label.
getData() - Method in class org.canova.api.io.DataInputBuffer
getData() - Method in class org.canova.api.io.DataOutputBuffer: Returns the current contents of the buffer.
getData() - Method in class org.canova.api.split.StringSplit
getDeflt() - Method in class org.canova.api.berkeley.Counter
getDeserializer(Class<T>) - Method in interface org.canova.api.io.serializers.Serialization
getDeserializer(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getDouble(long) - Method in class org.canova.api.writable.ArrayWritable
getEntrySet() - Method in class org.canova.api.berkeley.Counter
getEntrySet() - Method in class org.canova.api.berkeley.CounterMap
getFieldPaths() - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection
getFile(String, String) - Method in class org.canova.api.conf.Configuration: Get a local file name under a directory named in dirsProp with the given path.
getFile() - Method in class org.canova.api.util.ClassPathResource: Returns requested ClassPathResource as File object Please note: if this method called from compiled jar, temporary file will be created to provide File access
getFirst() - Method in class org.canova.api.berkeley.Pair
getFirst() - Method in class org.canova.api.berkeley.Triple
getFirstKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getFloat(String, float) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a float.
getFloat(long) - Method in class org.canova.api.writable.ArrayWritable
getFormattedTimeWithDiff(DateFormat, long, long) - Static method in class org.canova.api.util.StringUtils: Formats time in ms and appends difference (finishTime - startTime) as returned by formatTimeDiff().
getHostname() - Static method in class org.canova.api.util.StringUtils: Return hostname without throwing exception.
getInputStream() - Method in class org.canova.api.util.ClassPathResource: Returns requested ClassPathResource as InputStream object
getInstances(String, Class<U>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a List of objects implementing the interface specified by xface.
getInt(String, int) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as an int.
getInt(long) - Method in class org.canova.api.writable.ArrayWritable
getIs() - Method in class org.canova.api.split.InputStreamInputSplit
getKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry: Returns the key corresponding to this entry.
getKeyClass() - Method in class org.canova.api.io.WritableComparator: Returns the WritableComparable implementation class.
getLabelForPath(String) - Method in class org.canova.api.io.labels.ParentPathLabelGenerator
getLabelForPath(URI) - Method in class org.canova.api.io.labels.ParentPathLabelGenerator
getLabelForPath(String) - Method in interface org.canova.api.io.labels.PathLabelGenerator
getLabelForPath(URI) - Method in interface org.canova.api.io.labels.PathLabelGenerator
getLabelForPath(String) - Method in class org.canova.api.io.labels.PatternPathLabelGenerator
getLabelForPath(URI) - Method in class org.canova.api.io.labels.PatternPathLabelGenerator
getLabels() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
getLabels() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
getLabels() - Method in class org.canova.api.records.reader.impl.FileRecordReader
getLabels() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
getLabels() - Method in class org.canova.api.records.reader.impl.LineRecordReader
getLabels() - Method in interface org.canova.api.records.reader.RecordReader: List of label strings
getLength() - Method in class org.canova.api.io.BinaryComparable: Return n st bytes 0..n-1 from {#getBytes()} are valid.
getLength() - Method in class org.canova.api.io.data.Text: Returns the number of bytes in the byte array
getLength() - Method in class org.canova.api.io.DataInputBuffer: Returns the length of the input.
getLength() - Method in class org.canova.api.io.DataOutputBuffer: Returns the length of the valid data currently in the buffer.
getLong(String, long) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a long.
getLong(long) - Method in class org.canova.api.writable.ArrayWritable
getNumFields() - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection
getPairIterator() - Method in class org.canova.api.berkeley.CounterMap
getPattern(String, Pattern) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Pattern.
getPosition() - Method in class org.canova.api.io.DataInputBuffer: Returns the current position in the input.
getPriority() - Method in class org.canova.api.berkeley.PriorityQueue
getPriority() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Gets the priority of the highest-priority element of the queue.
getProbability(E) - Method in class org.canova.api.berkeley.Counter: I know, I know, this should be wrapped in a Distribution class, but it's such a common use...why not.
getRange(String, String) - Method in class org.canova.api.conf.Configuration: Parse the given attribute as a set of integer ranges
getRaw(String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property, without doing variable expansion.
getResource(String) - Method in class org.canova.api.conf.Configuration: Get the URL for the named resource.
getRootDir() - Method in class org.canova.api.split.FileSplit
getSecond() - Method in class org.canova.api.berkeley.Pair
getSecond() - Method in class org.canova.api.berkeley.Triple
getSecondKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getSerialization(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getSerializer(Class<T>) - Method in interface org.canova.api.io.serializers.Serialization
getSerializer(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getSortedKeys() - Method in class org.canova.api.berkeley.Counter
getStringCollection(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as a collection of Strings.
getStringCollection(String) - Static method in class org.canova.api.util.StringUtils: Returns a collection of strings.
getStrings(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings.
getStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings.
getStrings(String) - Static method in class org.canova.api.util.StringUtils: Returns an arraylist of strings.
getThird() - Method in class org.canova.api.berkeley.Triple
getTrimmedStringCollection(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as a collection of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStringCollection(String) - Static method in class org.canova.api.util.StringUtils: Splits a comma separated value String, trimming leading and trailing whitespace on each value.
getTrimmedStrings(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStrings(String) - Static method in class org.canova.api.util.StringUtils: Splits a comma separated value String, trimming leading and trailing whitespace on each value.
getValue() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getValueIfMissing() - Method in class org.canova.api.records.reader.impl.jackson.FieldSelection
getVIntSize(long) - Static method in class org.canova.api.io.WritableUtils: Get the encoded length if an integer is stored in a variable-length format
getVIntSize(long) - Static method in class org.canova.api.records.Utils: Get the encoded length if an integer is stored in a variable-length format
gr(double, double) - Static method in class org.canova.api.util.MathUtils: Tests if a is greater than b.
grow(int) - Method in class org.canova.api.berkeley.PriorityQueue

H

hashBytes(byte[], int, int) - Static method in class org.canova.api.io.WritableComparator: Compute hash for binary data.
hashBytes(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Compute hash for binary data.
hashCode() - Method in class org.canova.api.berkeley.Pair
hashCode() - Method in class org.canova.api.berkeley.Triple
hashCode() - Method in class org.canova.api.io.BinaryComparable: Return a hash of the bytes returned from {#getBytes()}.
hashCode() - Method in class org.canova.api.io.data.BooleanWritable
hashCode() - Method in class org.canova.api.io.data.ByteWritable
hashCode() - Method in class org.canova.api.io.data.DoubleWritable
hashCode() - Method in class org.canova.api.io.data.FloatWritable
hashCode() - Method in class org.canova.api.io.data.IntWritable
hashCode() - Method in class org.canova.api.io.data.LongWritable
hashCode() - Method in class org.canova.api.io.data.Text
hashCode() - Method in class org.canova.api.records.Buffer
hashCode() - Method in class org.canova.api.util.MultiDimensionalMap
HashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.HashMapFactory
hashSet() - Static method in class org.canova.api.util.MultiDimensionalSet
hasNext() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
hasNext() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
hasNext() - Method in class org.canova.api.berkeley.Iterators.Transform
hasNext() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
hasNext() - Method in class org.canova.api.berkeley.PriorityQueue
hasNext() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns true if the priority queue is non-empty
hasNext() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.FileRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.LineRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.MatlabRecordReader
hasNext() - Method in interface org.canova.api.records.reader.RecordReader: Whether there are anymore records
heapifyDown(int) - Method in class org.canova.api.berkeley.PriorityQueue
heapifyUp(int) - Method in class org.canova.api.berkeley.PriorityQueue
hexchars - Static variable in class org.canova.api.records.Utils
hexStringToByte(String) - Static method in class org.canova.api.util.StringUtils: Given a hexstring this will return the byte array corresponding to the string
humanReadableInt(long) - Static method in class org.canova.api.util.StringUtils: Given an integer, return a string that is in an approximate, but human readable format.
hypergeometric(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a hypergeometric distribution.
hypotenuse(double, double) - Static method in class org.canova.api.util.MathUtils: sqrt(a^2 + b^2) without under/overflow.

I

IdentityHashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.IdentityHashMapFactory
idf(double, double) - Static method in class org.canova.api.util.MathUtils: Inverse document frequency: the total docs divided by the number of times the word appeared in a document
incr() - Method in interface org.canova.api.records.Index
incrementAll(Collection<? extends E>, double) - Method in class org.canova.api.berkeley.Counter: Increment each element in a given collection by a given amount.
incrementAll(Counter<T>) - Method in class org.canova.api.berkeley.Counter
incrementAll(Map<K, V>, double) - Method in class org.canova.api.berkeley.CounterMap
incrementAll(CounterMap<K, V>) - Method in class org.canova.api.berkeley.CounterMap
incrementCount(E, double) - Method in class org.canova.api.berkeley.Counter: Increment a key's count by the given amount.
incrementCount(K, V, double) - Method in class org.canova.api.berkeley.CounterMap: Increments the count for a particular (key, value) pair.
Index - Interface in org.canova.api.records: Interface that acts as an iterator for deserializing maps.
Index - Class in org.canova.api.util: An index is a applyTransformToDestination of objects augmented with a list and a reverse lookup table for fast lookups.
Index() - Constructor for class org.canova.api.util.Index
indexOf(Object) - Method in class org.canova.api.util.Index
information(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the entropy for a given vector of probabilities.
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.CSVRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.LineRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.LineRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
initialize(InputSplit) - Method in interface org.canova.api.records.reader.RecordReader: Called once at initialization.
initialize(Configuration, InputSplit) - Method in interface org.canova.api.records.reader.RecordReader: Called once at initialization.
initialize() - Method in class org.canova.api.split.FileSplit
initialize() - Method in class org.canova.api.split.LimitFileSplit
initialize(Configuration) - Method in interface org.canova.api.vector.Vectorizer: Initialize based on a configuration
InputFormat - Interface in org.canova.api.formats.input: Create an input format
inputSplit - Variable in class org.canova.api.records.reader.impl.FileRecordReader
inputSplit - Variable in class org.canova.api.records.reader.impl.LineRecordReader
InputSplit - Interface in org.canova.api.split: An input split
InputStreamInputSplit - Class in org.canova.api.split: Input stream input split.
InputStreamInputSplit(InputStream, String) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream, File) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream, URI) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream) - Constructor for class org.canova.api.split.InputStreamInputSplit
INSTANCE - Static variable in class org.canova.api.io.data.NullWritable
IntegerRanges() - Constructor for class org.canova.api.conf.Configuration.IntegerRanges
IntegerRanges(String) - Constructor for class org.canova.api.conf.Configuration.IntegerRanges
intersection(Collection<T>, Collection<T>) - Static method in class org.canova.api.util.SetUtils
intersectionP(Set<? extends T>, Set<? extends T>) - Static method in class org.canova.api.util.SetUtils
intPow(int, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
intPow(float, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
intPow(double, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
IntWritable - Class in org.canova.api.io.data: A WritableComparable for ints.
IntWritable() - Constructor for class org.canova.api.io.data.IntWritable
IntWritable(int) - Constructor for class org.canova.api.io.data.IntWritable
IntWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for IntWritable.
invert() - Method in class org.canova.api.berkeley.CounterMap: Constructs reverse CounterMap where the count of a pair (k,v) is the count of (v,k) in the current CounterMap
isDangerous(double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns true if the argument is a "dangerous" double to have around, namely one that is infinite, NaN or zero.
isDangerous(float) - Static method in class org.canova.api.berkeley.SloppyMath
isDiscreteProb(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
isEmpty() - Method in class org.canova.api.berkeley.Counter: True if there are no entries in the counter (false does not mean totalCount > 0)
isEmpty() - Method in class org.canova.api.berkeley.CounterMap: True if there are no entries in the CounterMap (false does not mean totalCount > 0)
isEmpty() - Method in class org.canova.api.berkeley.PriorityQueue
isEmpty() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: True if the queue is empty (size == 0).
isEmpty() - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map contains no key-value mappings.
isEmpty() - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains no elements.
isEqualTo(Counter<E>) - Method in class org.canova.api.berkeley.Counter
isEqualTo(CounterMap<K, V>) - Method in class org.canova.api.berkeley.CounterMap
isGreater(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
isIncluded(int) - Method in class org.canova.api.conf.Configuration.IntegerRanges: Is the given value in the set of ranges
isNegativeVInt(byte) - Static method in class org.canova.api.io.WritableUtils: Given the first byte of a vint/vlong, determine the sign
isVeryDangerous(double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns true if the argument is a "very dangerous" double to have around, namely one that is infinite or NaN.
iter - Variable in class org.canova.api.records.reader.impl.FileRecordReader
iterator() - Method in class org.canova.api.conf.Configuration: Get an Iterator to go through the list of String key-value pairs in the configuration.
iterator() - Method in class org.canova.api.util.MultiDimensionalSet: Returns an iterator over the elements in this applyTransformToDestination.
IteratorIterator(Iterator, Factory<Iterator<T>>) - Constructor for class org.canova.api.berkeley.Iterators.IteratorIterator
Iterators - Class in org.canova.api.berkeley
Iterators.FilteredIterator<T> - Class in org.canova.api.berkeley: Creates an iterator that only returns items of a base iterator that pass a filter.
Iterators.IteratorIterator<T> - Class in org.canova.api.berkeley: Wraps a two-level iteration scenario in an iterator.
Iterators.Transform<S,T> - Class in org.canova.api.berkeley: Wraps a base iterator with a transformation function.
Iterators.TransformingIterator<I,O> - Class in org.canova.api.berkeley

J

JacksonRecordReader - Class in org.canova.api.records.reader.impl.jackson

RecordReader using Jackson.
Design for this record reader:
- Support for JSON, XML and YAML: one record per file only, via Jackson ObjectMapper:

FieldSelection

JacksonRecordReader(FieldSelection, ObjectMapper) - Constructor for class org.canova.api.records.reader.impl.jackson.JacksonRecordReader

JacksonRecordReader(FieldSelection, ObjectMapper, boolean) - Constructor for class org.canova.api.records.reader.impl.jackson.JacksonRecordReader

JacksonRecordReader(FieldSelection, ObjectMapper, boolean, long, PathLabelGenerator) - Constructor for class org.canova.api.records.reader.impl.jackson.JacksonRecordReader

JacksonRecordReader(FieldSelection, ObjectMapper, boolean, long, PathLabelGenerator, int) - Constructor for class org.canova.api.records.reader.impl.jackson.JacksonRecordReader

join(Iterable, String) - Static method in class org.canova.api.berkeley.StringUtils

Joins each elem in the Collection with the given glue.

join(List<?>, String) - Static method in class org.canova.api.berkeley.StringUtils

Joins each elem in the List with the given glue.

join(Object[], String) - Static method in class org.canova.api.berkeley.StringUtils

Joins each elem in the array with the given glue.

join(List) - Static method in class org.canova.api.berkeley.StringUtils

Joins elems with a space.

join(Object[]) - Static method in class org.canova.api.berkeley.StringUtils

Joins elems with a space.

join(CharSequence, Iterable<String>) - Static method in class org.canova.api.util.StringUtils

Concatenates strings, using a separator.

joinObjects(CharSequence, Iterable<?>) - Static method in class org.canova.api.util.StringUtils

Concatenates stringified objects, using a separator.

K

keepBottomNKeys(int) - Method in class org.canova.api.berkeley.Counter
keepTopNKeys(int) - Method in class org.canova.api.berkeley.Counter
keySet() - Method in class org.canova.api.berkeley.Counter: The elements in the counter.
keySet() - Method in class org.canova.api.berkeley.CounterMap: Returns the keys that have been inserted into this CounterMap.
keySet() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Set view of the keys contained in this map.
kroneckerDelta(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the kronecker delta of two doubles.

L

labelGenerator - Variable in class org.canova.api.io.filters.BalancedPathFilter
labels - Variable in class org.canova.api.records.reader.impl.FileRecordReader
LABELS - Static variable in interface org.canova.api.records.reader.RecordReader
LabelWriterConverter - Class in org.canova.api.io.converters: Convert a label in to an index based on the
LabelWriterConverter(List<String>) - Constructor for class org.canova.api.io.converters.LabelWriterConverter
lambert(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
leftChild(int) - Method in class org.canova.api.berkeley.PriorityQueue
length - Variable in class org.canova.api.split.BaseInputSplit
length() - Method in class org.canova.api.split.BaseInputSplit
length() - Method in class org.canova.api.split.CollectionInputSplit
length() - Method in class org.canova.api.split.FileSplit
length() - Method in interface org.canova.api.split.InputSplit: Length of the split
length() - Method in class org.canova.api.split.InputStreamInputSplit
length() - Method in class org.canova.api.split.NumberedFileInputSplit
length() - Method in class org.canova.api.split.StringSplit
length() - Method in class org.canova.api.writable.ArrayWritable
LexicographicPairComparator(Comparator<F>, Comparator<S>) - Constructor for class org.canova.api.berkeley.Pair.LexicographicPairComparator
LibSvm - Interface in org.canova.api.records.reader
LibSvmInputFormat - Class in org.canova.api.formats.input.impl: Lib svm input format
LibSvmInputFormat() - Constructor for class org.canova.api.formats.input.impl.LibSvmInputFormat
LibSvmOutputFormat - Class in org.canova.api.formats.output.impl
LibSvmOutputFormat() - Constructor for class org.canova.api.formats.output.impl.LibSvmOutputFormat
LibSvmRecordReader - Class in org.canova.api.records.reader.impl
LibSvmRecordReader() - Constructor for class org.canova.api.records.reader.impl.LibSvmRecordReader
LibSvmRecordWriter - Class in org.canova.api.records.writer.impl: Each line is in the format: label i:value where is is the current index and value is a double separated by space
LibSvmRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter() - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
limitDecimalTo2(double) - Static method in class org.canova.api.util.StringUtils
LimitFileSplit - Class in org.canova.api.split: File input split that allows limits on number of files loaded.
LimitFileSplit(File, String[], boolean, int, int, String, int, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, int) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], boolean, int) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, int, String) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, int, int, String) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], int, int, String) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], int, int, String, int, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, int, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, int, String, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], int, int, String, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], int, String, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LimitFileSplit(File, String[], int, String, int, Random) - Constructor for class org.canova.api.split.LimitFileSplit
LineInputFormat - Class in org.canova.api.formats.input.impl: Line input format creates an @link{LineRecordReader}
LineInputFormat() - Constructor for class org.canova.api.formats.input.impl.LineInputFormat
LineOutputFormat - Class in org.canova.api.formats.output.impl: Line output format
LineOutputFormat() - Constructor for class org.canova.api.formats.output.impl.LineOutputFormat
LineRecordReader - Class in org.canova.api.records.reader.impl: Reads files line by line
LineRecordReader() - Constructor for class org.canova.api.records.reader.impl.LineRecordReader
LineRecordWriter - Class in org.canova.api.records.writer.impl: Line record writer
LineRecordWriter() - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
locations - Variable in class org.canova.api.split.BaseInputSplit
locations() - Method in class org.canova.api.split.BaseInputSplit
locations() - Method in class org.canova.api.split.CollectionInputSplit
locations() - Method in interface org.canova.api.split.InputSplit: Locations of the splits
locations() - Method in class org.canova.api.split.InputStreamInputSplit
locations() - Method in class org.canova.api.split.NumberedFileInputSplit
locations() - Method in class org.canova.api.split.StringSplit
LOG - Static variable in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
log - Static variable in class org.canova.api.split.LimitFileSplit
log2 - Static variable in class org.canova.api.util.MathUtils: The natural logarithm of 2.
log2(double) - Static method in class org.canova.api.util.MathUtils: Returns the logarithm of a for base 2.
logAdd(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the log of the sum of two numbers, which are themselves input in log form.
logAdd(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the log of the sum of two numbers, which are themselves input in log form.
logAdd(float[]) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(double[]) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(List<Double>) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(float[], int) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(double[], int) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(Counter<T>) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd_Old(float[]) - Static method in class org.canova.api.berkeley.SloppyMath
logNormalize(double[]) - Static method in class org.canova.api.berkeley.SloppyMath
logs2probs(double[]) - Static method in class org.canova.api.util.MathUtils: Converts an array containing the natural logarithms of probabilities stored in a vector back into probabilities.
logSubtract(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
LOGTOLERANCE - Static variable in class org.canova.api.berkeley.SloppyMath: If a difference is bigger than this in log terms, then the sum or difference of them will just be the larger (to 12 or so decimal places for double, and 7 or 8 for float).
longestCommonSubstring(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the longest common substring of s and t.
LongWritable - Class in org.canova.api.io.data: A WritableComparable for longs.
LongWritable() - Constructor for class org.canova.api.io.data.LongWritable
LongWritable(long) - Constructor for class org.canova.api.io.data.LongWritable
LongWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for LongWritable.
LongWritable.DecreasingComparator - Class in org.canova.api.io.data: A decreasing Comparator optimized for LongWritable.
lookingAt(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression can be found at the beginning of this String.

M

main(String[]) - Static method in class org.canova.api.berkeley.Counter
main(String[]) - Static method in class org.canova.api.berkeley.CounterMap
main(String[]) - Static method in class org.canova.api.berkeley.PriorityQueue
main(String[]) - Static method in class org.canova.api.berkeley.SloppyMath: Tests the hypergeometric distribution code, or other functions provided in this module.
main(String[]) - Static method in class org.canova.api.berkeley.StringUtils
main(String[]) - Static method in class org.canova.api.conf.Configuration: For debugging.
makePair(S, T) - Static method in class org.canova.api.berkeley.Pair
makeTriple(S, T, U) - Static method in class org.canova.api.berkeley.Triple
manhattanDistance(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This will calculate the Manhattan distance between two sets of points.
MapFactory<K,V> - Class in org.canova.api.berkeley: The MapFactory is a mechanism for specifying what kind of map is to be used by some object.
MapFactory() - Constructor for class org.canova.api.berkeley.MapFactory
MapFactory.HashMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.IdentityHashMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.TreeMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.WeakHashMapFactory<K,V> - Class in org.canova.api.berkeley
matches(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression matches this String.
MathUtils - Class in org.canova.api.util: This is a math utils class.
MathUtils() - Constructor for class org.canova.api.util.MathUtils
MatlabInputFormat - Class in org.canova.api.formats.input.impl: Matlab input format
MatlabInputFormat() - Constructor for class org.canova.api.formats.input.impl.MatlabInputFormat
MatlabRecordReader - Class in org.canova.api.records.reader.impl: Matlab record reader
MatlabRecordReader() - Constructor for class org.canova.api.records.reader.impl.MatlabRecordReader
MatlabRecordWriter - Class in org.canova.api.records.writer.impl: Write matlab records
MatlabRecordWriter() - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
max() - Method in class org.canova.api.berkeley.Counter
max(int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the minimum of three int values.
max(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the greater of two float values.
max(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the greater of two double values.
max(double[]) - Static method in class org.canova.api.util.MathUtils
maxIndex(double[]) - Static method in class org.canova.api.util.MathUtils: Returns index of maximum element in a given array of doubles.
maxLabels - Variable in class org.canova.api.io.filters.BalancedPathFilter
maxLengthIterator(Iterator<T>, int) - Static method in class org.canova.api.berkeley.Iterators: Provides a max number of elements for an underlying base iterator.
maxPaths - Variable in class org.canova.api.io.filters.RandomPathFilter
maxPathsPerLabel - Variable in class org.canova.api.io.filters.BalancedPathFilter
mean(double[]) - Static method in class org.canova.api.util.MathUtils: Computes the mean for an array of doubles.
mergeCoords(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This will merge the coordinates of the given coordinate system.
mergeCoords(List<Double>, List<Double>) - Static method in class org.canova.api.util.MathUtils: This will merge the coordinates of the given coordinate system.
min() - Method in class org.canova.api.berkeley.Counter
min(int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the minimum of three int values.
min(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the smaller of two float values.
min(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the smaller of two double values.
min(double[]) - Static method in class org.canova.api.util.MathUtils
MultiDimensionalMap<K,T,V> - Class in org.canova.api.util: Multiple key map
MultiDimensionalMap(Map<Pair<K, T>, V>) - Constructor for class org.canova.api.util.MultiDimensionalMap
MultiDimensionalMap.Entry<K,T,V> - Class in org.canova.api.util
MultiDimensionalSet<K,V> - Class in org.canova.api.util: Created by agibsonccc on 4/29/14.
MultiDimensionalSet(Set<Pair<K, V>>) - Constructor for class org.canova.api.util.MultiDimensionalSet
MyMethod<I,O> - Interface in org.canova.api.berkeley: A function wrapping interface.

N

NAME_SPACE - Static variable in class org.canova.api.records.reader.impl.LibSvmRecordReader
NAME_SPACE - Static variable in interface org.canova.api.records.reader.RecordReader
nChooseK(int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Computes n choose k in an efficient way.
NEW_LINE - Static variable in class org.canova.api.records.writer.impl.FileRecordWriter
newHashBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe hash map impl
newInstance(Object...) - Method in class org.canova.api.berkeley.Factory.DefaultFactory
newInstance(Object...) - Method in interface org.canova.api.berkeley.Factory
newInstance(Class<T>, Configuration) - Static method in class org.canova.api.util.ReflectionUtils: Create an object for the given class and initialize it from conf
newIterable(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Wraps an iterator as an iterable
newKey() - Method in class org.canova.api.io.WritableComparator: Construct a new WritableComparable instance.
newPair(S, T) - Static method in class org.canova.api.berkeley.Pair
newThreadSafeHashBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe hash map implementation
newThreadSafeTreeBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe sorted map implementation
newTreeBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Tree map implementation
next() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
next() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
next() - Method in class org.canova.api.berkeley.Iterators.Transform
next() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
next() - Method in class org.canova.api.berkeley.PriorityQueue
next() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns the element in the queue with highest priority, and pops it from the queue.
next() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
next() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
next() - Method in class org.canova.api.records.reader.impl.CSVRecordReader
next() - Method in class org.canova.api.records.reader.impl.FileRecordReader
next() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
next() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
next() - Method in class org.canova.api.records.reader.impl.LineRecordReader
next() - Method in class org.canova.api.records.reader.impl.MatlabRecordReader
next() - Method in class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
next() - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
next() - Method in interface org.canova.api.records.reader.RecordReader: Get the next record
nextList(List<Iterator<T>>) - Static method in class org.canova.api.berkeley.Iterators
nextPowOf2(long) - Static method in class org.canova.api.util.MathUtils: See: http://stackoverflow.com/questions/466204/rounding-off-to-nearest-power-of-2
noNaNDivide(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
normalize() - Method in class org.canova.api.berkeley.Counter: Destructively normalize this Counter in place.
normalize() - Method in class org.canova.api.berkeley.CounterMap
normalize(double, double, double) - Static method in class org.canova.api.util.MathUtils: Normalize a value (val - min) / (max - min)
normalize(double[], double) - Static method in class org.canova.api.util.MathUtils: Normalizes the doubles in the array using the given value.
normalizeToOne(double[]) - Static method in class org.canova.api.util.MathUtils
normalizeWithDiscount(double) - Method in class org.canova.api.berkeley.CounterMap
nthIndex(String, char, int) - Static method in class org.canova.api.berkeley.StringUtils: Returns the index of the nth occurrence of ch in s, or -1 if there are less than n occurrences of ch.
NullWritable - Class in org.canova.api.io.data: NullWritable.
NullWritable() - Constructor for class org.canova.api.io.data.NullWritable
NUM_ATTRIBUTES - Static variable in class org.canova.api.records.reader.impl.SVMLightRecordReader
NUM_FEATURES - Static variable in class org.canova.api.records.reader.impl.LibSvmRecordReader
NumberedFileInputSplit - Class in org.canova.api.split: InputSplit for sequences of numbered files.
NumberedFileInputSplit(String, int, int) - Constructor for class org.canova.api.split.NumberedFileInputSplit
numCategories - Variable in class org.canova.api.split.LimitFileSplit

O

objectIterator(ObjectInputStream) - Static method in class org.canova.api.berkeley.Iterators
oneItemIterator(U) - Static method in class org.canova.api.berkeley.Iterators
oneTailedFishersExact(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a one-tailed Fisher's exact probability.
onRecord(Collection<Writable>) - Method in interface org.canova.api.vector.Vectorizer.RecordCallBack: The record callback
open(InputStream) - Method in interface org.canova.api.io.serializers.Deserializer: Prepare the deserializer for reading.
open(OutputStream) - Method in interface org.canova.api.io.serializers.Serializer: Prepare the serializer for writing.
org.canova.api.berkeley - package org.canova.api.berkeley
org.canova.api.conf - package org.canova.api.conf
org.canova.api.exceptions - package org.canova.api.exceptions
org.canova.api.formats.input - package org.canova.api.formats.input
org.canova.api.formats.input.impl - package org.canova.api.formats.input.impl
org.canova.api.formats.output - package org.canova.api.formats.output
org.canova.api.formats.output.impl - package org.canova.api.formats.output.impl
org.canova.api.io - package org.canova.api.io
org.canova.api.io.converters - package org.canova.api.io.converters
org.canova.api.io.data - package org.canova.api.io.data
org.canova.api.io.filters - package org.canova.api.io.filters
org.canova.api.io.labels - package org.canova.api.io.labels
org.canova.api.io.serializers - package org.canova.api.io.serializers
org.canova.api.records - package org.canova.api.records
org.canova.api.records.reader - package org.canova.api.records.reader
org.canova.api.records.reader.factory - package org.canova.api.records.reader.factory
org.canova.api.records.reader.impl - package org.canova.api.records.reader.impl
org.canova.api.records.reader.impl.jackson - package org.canova.api.records.reader.impl.jackson
org.canova.api.records.reader.impl.regex - package org.canova.api.records.reader.impl.regex
org.canova.api.records.writer - package org.canova.api.records.writer
org.canova.api.records.writer.impl - package org.canova.api.records.writer.impl
org.canova.api.split - package org.canova.api.split
org.canova.api.util - package org.canova.api.util
org.canova.api.vector - package org.canova.api.vector
org.canova.api.writable - package org.canova.api.writable
out - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
OUTPUT_PATH - Static variable in interface org.canova.api.formats.output.OutputFormat
OutputFormat - Interface in org.canova.api.formats.output: Create a record writer

P

pad(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Return a String of length a minimum of totalChars characters by padding the input String str with spaces.
pad(Object, int) - Static method in class org.canova.api.berkeley.StringUtils: Pads the toString value of the given Object.
padLeft(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Pads the given String to the left with spaces to ensure that it's at least totalChars long.
padLeft(Object, int) - Static method in class org.canova.api.berkeley.StringUtils
padLeft(int, int) - Static method in class org.canova.api.berkeley.StringUtils
padLeft(double, int) - Static method in class org.canova.api.berkeley.StringUtils
padOrTrim(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Pad or trim so as to produce a string of exactly a certain length.
padOrTrim(Object, int) - Static method in class org.canova.api.berkeley.StringUtils: Pad or trim the toString value of the given Object.
Pair<F,S> - Class in org.canova.api.berkeley: A generic-typed pair of objects.
Pair(F, S) - Constructor for class org.canova.api.berkeley.Pair
Pair.DefaultLexicographicPairComparator<F extends Comparable<F>,S extends Comparable<S>> - Class in org.canova.api.berkeley
Pair.FirstComparator<S extends Comparable<? super S>,T> - Class in org.canova.api.berkeley
Pair.LexicographicPairComparator<F,S> - Class in org.canova.api.berkeley
Pair.ReverseFirstComparator<S extends Comparable<? super S>,T> - Class in org.canova.api.berkeley
Pair.ReverseSecondComparator<S,T extends Comparable<? super T>> - Class in org.canova.api.berkeley
Pair.SecondComparator<S,T extends Comparable<? super T>> - Class in org.canova.api.berkeley
parent(int) - Method in class org.canova.api.berkeley.PriorityQueue
ParentPathLabelGenerator - Class in org.canova.api.io.labels
ParentPathLabelGenerator() - Constructor for class org.canova.api.io.labels.ParentPathLabelGenerator
parseCommandLineArguments(String[]) - Static method in class org.canova.api.berkeley.StringUtils: A simpler form of command line argument parsing.
partitionVariable(List<Double>, int) - Static method in class org.canova.api.util.MathUtils: This will partition the given whole variable data applyTransformToDestination in to the specified chunk number.
PATH - Static variable in class org.canova.api.records.writer.impl.FileRecordWriter
PathFilter - Interface in org.canova.api.io.filters
PathLabelGenerator - Interface in org.canova.api.io.labels: PathLabelGenerator: interface to infer the label of a file directly from the path of a file
Example: /negative/file17.csv -> class "0"; /positive/file116.csv -> class "1" etc.
Though note that the output is a writable, hence it need not be numerical.
pattern - Variable in class org.canova.api.io.labels.PatternPathLabelGenerator
pattern - Variable in class org.canova.api.split.LimitFileSplit
PatternPathLabelGenerator - Class in org.canova.api.io.labels
PatternPathLabelGenerator(String, int) - Constructor for class org.canova.api.io.labels.PatternPathLabelGenerator
patternPosition - Variable in class org.canova.api.io.labels.PatternPathLabelGenerator
patternPosition - Variable in class org.canova.api.split.LimitFileSplit
peek() - Method in class org.canova.api.berkeley.PriorityQueue
peek() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns the highest-priority element in the queue, but does not pop it.
pennPOSToWordnetPOS(String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the WordNet 2.0 POS tag corresponding to the PTB POS tag s.
permutation(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the permutation of n choose r.
printStringOneCharPerLine(String) - Static method in class org.canova.api.berkeley.StringUtils
printThreadInfo(PrintWriter, String) - Static method in class org.canova.api.util.ReflectionUtils: Print all of the thread's information and stack traces.
printToFile(File, String, boolean) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(File, String) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(String, String, boolean) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
PriorityQueue<E> - Class in org.canova.api.berkeley: A priority queue based on a binary heap.
PriorityQueue() - Constructor for class org.canova.api.berkeley.PriorityQueue
PriorityQueue(int) - Constructor for class org.canova.api.berkeley.PriorityQueue
PriorityQueueInterface<E> - Interface in org.canova.api.berkeley
probRound(double, Random) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the next nearest integer value in a probabilistic fashion (e.g.
probToLogOdds(double) - Static method in class org.canova.api.util.MathUtils: Returns the log-odds for a given probability.
pruneKeysBelowThreshold(double) - Method in class org.canova.api.berkeley.Counter
put(E, double, boolean) - Method in class org.canova.api.berkeley.Counter: Set the count for the given key if it is larger than the previous one;
put(E, double) - Method in class org.canova.api.berkeley.PriorityQueue
put(E, double) - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Adds a key to the queue with the given priority.
put(Pair<K, T>, V) - Method in class org.canova.api.util.MultiDimensionalMap: Associates the specified value with the specified key in this map (optional operation).
put(K, T, V) - Method in class org.canova.api.util.MultiDimensionalMap
putAll(Map<? extends Pair<K, T>, ? extends V>) - Method in class org.canova.api.util.MultiDimensionalMap: Copies all of the mappings from the specified map to this map (optional operation).

R

random - Variable in class org.canova.api.io.filters.RandomPathFilter
random - Variable in class org.canova.api.split.FileSplit
randomDoubleBetween(double, double) - Static method in class org.canova.api.util.MathUtils
randomFloatBetween(float, float) - Static method in class org.canova.api.util.MathUtils
randomize - Variable in class org.canova.api.split.FileSplit
randomNumberBetween(double, double) - Static method in class org.canova.api.util.MathUtils: Generates a random integer between the specified numbers
randomNumberBetween(double, double, RandomGenerator) - Static method in class org.canova.api.util.MathUtils: Generates a random integer between the specified numbers
RandomPathFilter - Class in org.canova.api.io.filters
RandomPathFilter(Random, String...) - Constructor for class org.canova.api.io.filters.RandomPathFilter
RandomPathFilter(Random, String[], int) - Constructor for class org.canova.api.io.filters.RandomPathFilter
RawComparator<T> - Interface in org.canova.api.io: A Comparator that operates directly on byte representations of objects.
readCompressedByteArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readCompressedString(DataInput) - Static method in class org.canova.api.io.WritableUtils
readCompressedStringArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readDouble(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a double from a byte array.
readDouble(byte[], int) - Static method in class org.canova.api.records.Utils: Parse a double from a byte array.
readEnum(DataInput, Class<T>) - Static method in class org.canova.api.io.WritableUtils: Read an Enum value from DataInput, Enums are read and written using String values.
readFields(DataInput) - Method in class org.canova.api.conf.Configuration
readFields(DataInput) - Method in class org.canova.api.formats.input.BaseInputFormat
readFields(DataInput) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
readFields(DataInput) - Method in class org.canova.api.formats.input.impl.LineInputFormat
readFields(DataInput) - Method in class org.canova.api.io.data.BooleanWritable
readFields(DataInput) - Method in class org.canova.api.io.data.ByteWritable
readFields(DataInput) - Method in class org.canova.api.io.data.DoubleWritable
readFields(DataInput) - Method in class org.canova.api.io.data.FloatWritable
readFields(DataInput) - Method in class org.canova.api.io.data.IntWritable
readFields(DataInput) - Method in class org.canova.api.io.data.LongWritable
readFields(DataInput) - Method in class org.canova.api.io.data.NullWritable
readFields(DataInput) - Method in class org.canova.api.io.data.Text: deserialize
readFields(DataInput) - Method in class org.canova.api.split.CollectionInputSplit
readFields(DataInput) - Method in class org.canova.api.split.FileSplit
readFields(DataInput) - Method in class org.canova.api.split.InputStreamInputSplit
readFields(DataInput) - Method in class org.canova.api.split.NumberedFileInputSplit
readFields(DataInput) - Method in class org.canova.api.split.StringSplit
readFields(DataInput) - Method in interface org.canova.api.writable.Writable: Deserialize the fields of this object from in.
readFloat(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a float from a byte array.
readFloat(byte[], int) - Static method in class org.canova.api.records.Utils: Parse a float from a byte array.
readInt(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse an integer from a byte array.
readLong(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a long from a byte array.
readString(DataInput) - Static method in class org.canova.api.io.data.Text: Read a UTF8 encoded string from in
readString(DataInput) - Static method in class org.canova.api.io.WritableUtils
readStringArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readUnsignedShort(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse an unsigned short from a byte array.
readVInt(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Reads a zero-compressed encoded integer from a byte array and returns it.
readVInt(DataInput) - Static method in class org.canova.api.io.WritableUtils: Reads a zero-compressed encoded integer from input stream and returns it.
readVInt(byte[], int) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded integer from a byte array and returns it.
readVInt(DataInput) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded integer from a stream and returns it.
readVLong(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Reads a zero-compressed encoded long from a byte array and returns it.
readVLong(DataInput) - Static method in class org.canova.api.io.WritableUtils: Reads a zero-compressed encoded long from input stream and returns it.
readVLong(byte[], int) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded long from a byte array and returns it.
readVLong(DataInput) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded long from a stream and return it.
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.CSVRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.FileRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.LineRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.MatlabRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
record(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
record(URI, DataInputStream) - Method in interface org.canova.api.records.reader.RecordReader: Load the record from the given DataInputStream Unlike RecordReader.next() the internal state of the RecordReader is not modified Implementations of this method should not close the DataInputStream
RecordReader - Interface in org.canova.api.records.reader: Record reader
RecordReaderFactory - Interface in org.canova.api.records.reader.factory: Factory for creating RecordReader instance
RecordUtils - Class in org.canova.api.util: Create records from the specified input
RecordUtils() - Constructor for class org.canova.api.util.RecordUtils
RecordWriter - Interface in org.canova.api.records.writer: Record writer
RecordWriterFactory - Interface in org.canova.api.records.reader.factory: Factory for creating RecordWriter instance
recursive - Variable in class org.canova.api.split.FileSplit
ReflectionUtils - Class in org.canova.api.util: General reflection utils
ReflectionUtils() - Constructor for class org.canova.api.util.ReflectionUtils
RegexLineRecordReader - Class in org.canova.api.records.reader.impl.regex: RegexLineRecordReader: Read a file, one line at a time, and split it into fields using a regex.
RegexLineRecordReader(String, int) - Constructor for class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
RegexSequenceRecordReader - Class in org.canova.api.records.reader.impl.regex: RegexSequenceRecordReader: Read an entire file (as a sequence), one line at a time and split each line into fields using a regex.
RegexSequenceRecordReader(String, int) - Constructor for class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
RegexSequenceRecordReader(String, int, Charset, RegexSequenceRecordReader.LineErrorHandling) - Constructor for class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
RegexSequenceRecordReader.LineErrorHandling - Enum in org.canova.api.records.reader.impl.regex: Error handling mode: How should invalid lines (i.e., those that don't match the provided regex) be handled?
FailOnInvalid: Throw an IllegalStateException when an invalid line is found
SkipInvalid: Skip invalid lines (quietly, with no warning)
SkipInvalidWithWarning: Skip invalid lines, but log a warning
relativeDifferance(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
reloadConfiguration() - Method in class org.canova.api.conf.Configuration: Reload configuration from previously added resources.
remove() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
remove() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
remove() - Method in class org.canova.api.berkeley.Iterators.Transform
remove() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
remove() - Method in class org.canova.api.berkeley.PriorityQueue
remove() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Not supported -- next() already removes the head of the queue.
remove(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Removes the mapping for a key from this map if it is present (optional operation).
remove(Object) - Method in class org.canova.api.util.MultiDimensionalSet: Removes the specified element from this applyTransformToDestination if it is present (optional operation).
removeAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Removes from this applyTransformToDestination all of its elements that are contained in the specified collection (optional operation).
removeFirst() - Method in class org.canova.api.berkeley.PriorityQueue
removeKey(E) - Method in class org.canova.api.berkeley.Counter
removeKey(K) - Method in class org.canova.api.berkeley.CounterMap
removeKeyFromEntries(E) - Method in class org.canova.api.berkeley.Counter
reset(byte[], int) - Method in class org.canova.api.io.DataInputBuffer: Resets the data that the buffer reads.
reset(byte[], int, int) - Method in class org.canova.api.io.DataInputBuffer: Resets the data that the buffer reads.
reset() - Method in class org.canova.api.io.DataOutputBuffer: Resets the buffer to empty.
reset() - Method in class org.canova.api.records.Buffer: Reset the buffer to 0 size
reset() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
reset() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
reset() - Method in class org.canova.api.records.reader.impl.FileRecordReader
reset() - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
reset() - Method in class org.canova.api.records.reader.impl.LineRecordReader
reset() - Method in class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
reset() - Method in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
reset() - Method in interface org.canova.api.records.reader.RecordReader: Reset record reader iterator
retainAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Retains only the elements in this applyTransformToDestination that are contained in the specified collection (optional operation).
reverse() - Method in class org.canova.api.berkeley.Pair
ReverseFirstComparator() - Constructor for class org.canova.api.berkeley.Pair.ReverseFirstComparator
ReverseSecondComparator() - Constructor for class org.canova.api.berkeley.Pair.ReverseSecondComparator
rightChild(int) - Method in class org.canova.api.berkeley.PriorityQueue
rootDir - Variable in class org.canova.api.split.FileSplit
rootMeansSquaredError(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This returns the root mean squared error of two data sets
round(double) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the next nearest integer value.
roundDouble(double, int) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the given number of decimal places.
roundFloat(float, int) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the given number of decimal places.

S

sample(Random) - Method in class org.canova.api.berkeley.Counter: Will return a sample from the counter, will throw exception if any of the counts are < 0.0 or if the totalCount() <= 0.0
sample() - Method in class org.canova.api.berkeley.Counter: Will return a sample from the counter, will throw exception if any of the counts are < 0.0 or if the totalCount() <= 0.0
sample(PathFilter, double...) - Method in class org.canova.api.split.BaseInputSplit
sampleDoublesInInterval(double[][], int) - Static method in class org.canova.api.util.MathUtils
scale(double) - Method in class org.canova.api.berkeley.Counter
scale(double) - Method in class org.canova.api.berkeley.CounterMap: Scale all entries in CounterMap by scaleFactor
scaledClone(double) - Method in class org.canova.api.berkeley.Counter
SecondComparator() - Constructor for class org.canova.api.berkeley.Pair.SecondComparator
SelfWritableConverter - Class in org.canova.api.io.converters: Baseline writable converter
SelfWritableConverter() - Constructor for class org.canova.api.io.converters.SelfWritableConverter
sequenceRecord(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.CSVSequenceRecordReader
sequenceRecord() - Method in class org.canova.api.records.reader.impl.CSVSequenceRecordReader
sequenceRecord() - Method in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
sequenceRecord(URI, DataInputStream) - Method in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
sequenceRecord() - Method in interface org.canova.api.records.reader.SequenceRecordReader: Returns a sequence record`
sequenceRecord(URI, DataInputStream) - Method in interface org.canova.api.records.reader.SequenceRecordReader: Load a sequence record from the given DataInputStream Unlike RecordReader.next() the internal state of the RecordReader is not modified Implementations of this method should not close the DataInputStream
SequenceRecordReader - Interface in org.canova.api.records.reader: A sequence of records.
Serialization<T> - Interface in org.canova.api.io.serializers: Encapsulates a Serializer/Deserializer pair.
SerializationFactory - Class in org.canova.api.io.serializers: A factory for Serializations.
SerializationFactory(Configuration) - Constructor for class org.canova.api.io.serializers.SerializationFactory: Serializations are found by reading the io.serializations property from conf, which is a comma-delimited list of classnames.
serialize(T) - Method in interface org.canova.api.io.serializers.Serializer: Serialize t to the underlying output stream.
Serializer<T> - Interface in org.canova.api.io.serializers: Provides a facility for serializing objects of type to an OutputStream.
set(String, String) - Method in class org.canova.api.conf.Configuration: Set the value of the name property.
set(boolean) - Method in class org.canova.api.io.data.BooleanWritable: Set the value of the BooleanWritable
set(byte) - Method in class org.canova.api.io.data.ByteWritable: Set the value of this ByteWritable.
set(double) - Method in class org.canova.api.io.data.DoubleWritable
set(float) - Method in class org.canova.api.io.data.FloatWritable: Set the value of this FloatWritable.
set(int) - Method in class org.canova.api.io.data.IntWritable: Set the value of this IntWritable.
set(long) - Method in class org.canova.api.io.data.LongWritable: Set the value of this LongWritable.
set(String) - Method in class org.canova.api.io.data.Text: Set to contain the contents of a string.
set(byte[]) - Method in class org.canova.api.io.data.Text: Set to a utf8 byte array
set(Text) - Method in class org.canova.api.io.data.Text: copy a text.
set(byte[], int, int) - Method in class org.canova.api.io.data.Text: Set the Text to range of bytes
set(byte[]) - Method in class org.canova.api.records.Buffer: Use the specified bytes array as underlying sequence.
setAllCounts(double) - Method in class org.canova.api.berkeley.Counter: Sets all counts to the given value, but does not remove any keys
setBoolean(String, boolean) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a boolean.
setBooleanIfUnset(String, boolean) - Method in class org.canova.api.conf.Configuration: Set the given property, if it is currently unset.
setCapacity(int) - Method in class org.canova.api.records.Buffer: Change the capacity of the backing storage.
setClass(String, Class<?>, Class<?>) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to the name of a theClass implementing the given interface xface.
setClassLoader(ClassLoader) - Method in class org.canova.api.conf.Configuration: Set the class loader that will be used to load the various objects.
setConf(Configuration) - Method in interface org.canova.api.conf.Configurable: Set the configuration to be used by this object.
setConf(Configuration) - Method in class org.canova.api.conf.Configured
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.FileRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.jackson.JacksonRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.LineRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
setConf(Configuration) - Method in class org.canova.api.records.writer.impl.FileRecordWriter
setConf(Object, Configuration) - Static method in class org.canova.api.util.ReflectionUtils: Check and set 'configuration' if necessary.
setContentionTracing(boolean) - Static method in class org.canova.api.util.ReflectionUtils
setCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set the count for the given key, clobbering any previous count.
setCount(K, V, double) - Method in class org.canova.api.berkeley.CounterMap: Sets the count for a particular (key, value) pair.
setCounter(K, Counter<V>) - Method in class org.canova.api.berkeley.CounterMap
setDefault(double) - Method in class org.canova.api.berkeley.CounterMap
setDeflt(double) - Method in class org.canova.api.berkeley.Counter
setDirty(boolean) - Method in class org.canova.api.berkeley.Counter
setFirst(F) - Method in class org.canova.api.berkeley.Pair
setFirst(S) - Method in class org.canova.api.berkeley.Triple
setFirstKey(K) - Method in class org.canova.api.util.MultiDimensionalMap.Entry
setFloat(String, float) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a float.
setIfUnset(String, String) - Method in class org.canova.api.conf.Configuration: Sets a property if it is currently unset.
setInt(String, int) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to an int.
setIs(InputStream) - Method in class org.canova.api.split.InputStreamInputSplit
setLabels(List<String>) - Method in class org.canova.api.records.reader.impl.FileRecordReader
setLong(String, long) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a long.
setMaxCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set's the key's count to the maximum of the current count and val.
setMinCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set's the key's count to the minimum of the current count and val.
setPattern(String, Pattern) - Method in class org.canova.api.conf.Configuration: Set the given property to Pattern.
setQuietMode(boolean) - Method in class org.canova.api.conf.Configuration: Set the quietness-mode.
setSecond(S) - Method in class org.canova.api.berkeley.Pair
setSecond(T) - Method in class org.canova.api.berkeley.Triple
setSecondKey(T) - Method in class org.canova.api.util.MultiDimensionalMap.Entry
setStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Set the array of string values for the name property as as comma delimited values.
setThird(U) - Method in class org.canova.api.berkeley.Triple
SetUtils - Class in org.canova.api.util
setValue(V) - Method in class org.canova.api.util.MultiDimensionalMap.Entry: Replaces the value corresponding to this entry with the specified value (optional operation).
sigmoid(double) - Static method in class org.canova.api.util.MathUtils: 1 / 1 + exp(-x)
simpleHostname(String) - Static method in class org.canova.api.util.StringUtils: Given a full hostname, return the word upto the first dot.
size() - Method in class org.canova.api.berkeley.Counter: The number of entries in the counter (not the total count -- use totalCount() instead).
size() - Method in class org.canova.api.berkeley.CounterMap: The number of keys in this CounterMap (not the number of key-value entries -- use totalSize() for that)
size() - Method in class org.canova.api.berkeley.PriorityQueue
size() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Number of elements in the queue.
size() - Method in class org.canova.api.conf.Configuration: Return the number of keys in the configuration.
size() - Method in class org.canova.api.util.Index
size() - Method in class org.canova.api.util.MultiDimensionalMap: Returns the number of key-value mappings in this map.
size() - Method in class org.canova.api.util.MultiDimensionalSet: Returns the number of elements in this applyTransformToDestination (its cardinality).
skip(DataInput) - Static method in class org.canova.api.io.data.Text: Skips over one Text in the input.
SKIP_NUM_LINES - Static variable in class org.canova.api.records.reader.impl.CSVRecordReader
SKIP_NUM_LINES - Static variable in class org.canova.api.records.reader.impl.regex.RegexLineRecordReader
SKIP_NUM_LINES - Static variable in class org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader
skipCompressedByteArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
skipFully(DataInput, int) - Static method in class org.canova.api.io.WritableUtils: Skip len number of bytes in input streamin
slope(double, double, double, double) - Method in class org.canova.api.util.MathUtils: This returns the slope of the given points.
SloppyMath - Class in org.canova.api.berkeley: The class SloppyMath contains methods for performing basic numeric operations.
SloppyMath() - Constructor for class org.canova.api.berkeley.SloppyMath
slurpFile(File) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpFile(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file with the given encoding.
slurpFile(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file
slurpFileNoExceptions(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file with the given encoding.
slurpFileNoExceptions(File) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpFileNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpGBFile(String) - Static method in class org.canova.api.berkeley.StringUtils
slurpGBFileNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils
slurpGBURL(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpGBURLNoExceptions(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpReader(Reader) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text from the given Reader.
slurpURL(URL, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURL(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURL(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(URL, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
sm(double, double) - Static method in class org.canova.api.util.MathUtils: Tests if a is smaller than b.
SMALL - Static variable in class org.canova.api.util.MathUtils: The small deviation allowed in double comparisons.
split(String) - Static method in class org.canova.api.berkeley.StringUtils: Splits on whitespace (\\s+).
split(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Splits the given string using the given regex as delimiters.
split(String) - Static method in class org.canova.api.util.StringUtils: Split a string using the default separator
split(String, char, char) - Static method in class org.canova.api.util.StringUtils: Split a string using the given separator
splitOnCharWithQuoting(String, char, char, char) - Static method in class org.canova.api.berkeley.StringUtils: This function splits the String s into multiple Strings using the splitChar.
squaredLoss(double[], double[], double, double) - Static method in class org.canova.api.util.MathUtils: This will return the squared loss of the given points
ssError(double[], double[]) - Static method in class org.canova.api.util.MathUtils: How much of the variance is NOT explained by the regression
ssReg(double[], double[]) - Static method in class org.canova.api.util.MathUtils: How much of the variance is explained by the regression
ssTotal(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Total variance in target attribute
string2long(String) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Convert a string to long.
stringifyException(Throwable) - Static method in class org.canova.api.util.StringUtils: Make a string representation of the exception.
stringSimilarity(String...) - Static method in class org.canova.api.util.MathUtils: Calculate string similarity with tfidf weights relative to each character frequency and how many times a character appears in a given string
StringSplit - Class in org.canova.api.split: String split used for single line inputs
StringSplit(String) - Constructor for class org.canova.api.split.StringSplit
stringToProperties(String) - Static method in class org.canova.api.berkeley.StringUtils: This method converts a comma-separated String (with whitespace optionally allowed after the comma) representing properties to a Properties object.
stringToURI(String[]) - Static method in class org.canova.api.util.StringUtils
StringUtils - Class in org.canova.api.berkeley: StringUtils is a class for random String things.
StringUtils - Class in org.canova.api.util: General string utils
StringUtils() - Constructor for class org.canova.api.util.StringUtils
StringUtils.TraditionalBinaryPrefix - Enum in org.canova.api.util: The traditional binary prefixes, kilo, mega, ..., exa, which can be represented by a 64-bit integer.
stripNonAlphaNumerics(String) - Static method in class org.canova.api.berkeley.StringUtils
sum(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the sum of the given array.
sumOfMeanDifferences(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Used for calculating top part of simple regression for beta 1
sumOfMeanDifferencesOnePoint(double[]) - Static method in class org.canova.api.util.MathUtils: Used for calculating top part of simple regression for beta 1
sumOfProducts(double[]...) - Static method in class org.canova.api.util.MathUtils: This returns the sum of products for the given numbers.
sumOfSquares(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the sum of squares for the given vector.
SVMLightInputFormat - Class in org.canova.api.formats.input.impl: SVMLight input format
SVMLightInputFormat() - Constructor for class org.canova.api.formats.input.impl.SVMLightInputFormat
SVMLightOutputFormat - Class in org.canova.api.formats.output.impl: Created by agibsonccc on 1/11/15.
SVMLightOutputFormat() - Constructor for class org.canova.api.formats.output.impl.SVMLightOutputFormat
SVMLightRecordReader - Class in org.canova.api.records.reader.impl: Adapted from the weka svmlight reader June 2015 - adapted to understand HDFS-style block splits
SVMLightRecordReader() - Constructor for class org.canova.api.records.reader.impl.SVMLightRecordReader
SVMLightRecordWriter - Class in org.canova.api.records.writer.impl: SVM Light Record Writer
SVMLightRecordWriter() - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
swap(int, int) - Method in class org.canova.api.berkeley.PriorityQueue
symbol - Variable in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix

T

Text - Class in org.canova.api.io.data: This class stores text using standard UTF8 encoding.
Text() - Constructor for class org.canova.api.io.data.Text
Text(String) - Constructor for class org.canova.api.io.data.Text: Construct from a string.
Text(Text) - Constructor for class org.canova.api.io.data.Text: Construct from another text.
Text(byte[]) - Constructor for class org.canova.api.io.data.Text: Construct from a byte array.
Text.Comparator - Class in org.canova.api.io.data: A WritableComparator optimized for Text keys.
tf(int) - Static method in class org.canova.api.util.MathUtils: Term frequency: 1+ log10(count)
tfidf(double, double) - Static method in class org.canova.api.util.MathUtils: Return td * idf
thread(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Executes calls to next() in a different thread
times(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the product of all numbers in the given array.
toArray() - Method in class org.canova.api.util.MultiDimensionalSet: Returns an array containing all of the elements in this applyTransformToDestination.
toArray(T[]) - Method in class org.canova.api.util.MultiDimensionalSet: Returns an array containing all of the elements in this applyTransformToDestination; the runtime type of the returned array is that of the specified array.
toByteArray(Writable...) - Static method in class org.canova.api.io.WritableUtils: Convert writables to a byte array
toDecimal(String) - Static method in class org.canova.api.util.MathUtils: This will convert the given binary string to a decimal based integer
toDouble() - Method in class org.canova.api.conf.Configuration
toDouble() - Method in class org.canova.api.formats.input.BaseInputFormat
toDouble() - Method in class org.canova.api.io.data.BooleanWritable
toDouble() - Method in class org.canova.api.io.data.ByteWritable
toDouble() - Method in class org.canova.api.io.data.DoubleWritable
toDouble() - Method in class org.canova.api.io.data.FloatWritable
toDouble() - Method in class org.canova.api.io.data.IntWritable
toDouble() - Method in class org.canova.api.io.data.LongWritable
toDouble() - Method in class org.canova.api.io.data.NullWritable
toDouble() - Method in class org.canova.api.io.data.Text
toDouble() - Method in class org.canova.api.split.BaseInputSplit
toDouble() - Method in class org.canova.api.split.CollectionInputSplit
toDouble() - Method in class org.canova.api.split.InputStreamInputSplit
toDouble() - Method in class org.canova.api.split.NumberedFileInputSplit
toDouble() - Method in class org.canova.api.split.StringSplit
toDouble() - Method in class org.canova.api.writable.ArrayWritable
toDouble() - Method in interface org.canova.api.writable.Writable: Convert Writable to double.
toFloat() - Method in class org.canova.api.conf.Configuration
toFloat() - Method in class org.canova.api.formats.input.BaseInputFormat
toFloat() - Method in class org.canova.api.io.data.BooleanWritable
toFloat() - Method in class org.canova.api.io.data.ByteWritable
toFloat() - Method in class org.canova.api.io.data.DoubleWritable
toFloat() - Method in class org.canova.api.io.data.FloatWritable
toFloat() - Method in class org.canova.api.io.data.IntWritable
toFloat() - Method in class org.canova.api.io.data.LongWritable
toFloat() - Method in class org.canova.api.io.data.NullWritable
toFloat() - Method in class org.canova.api.io.data.Text
toFloat() - Method in class org.canova.api.split.BaseInputSplit
toFloat() - Method in class org.canova.api.split.CollectionInputSplit
toFloat() - Method in class org.canova.api.split.InputStreamInputSplit
toFloat() - Method in class org.canova.api.split.NumberedFileInputSplit
toFloat() - Method in class org.canova.api.split.StringSplit
toFloat() - Method in class org.canova.api.writable.ArrayWritable
toFloat() - Method in interface org.canova.api.writable.Writable: Convert Writable to float.
toInt() - Method in class org.canova.api.conf.Configuration
toInt() - Method in class org.canova.api.formats.input.BaseInputFormat
toInt() - Method in class org.canova.api.io.data.BooleanWritable
toInt() - Method in class org.canova.api.io.data.ByteWritable
toInt() - Method in class org.canova.api.io.data.DoubleWritable
toInt() - Method in class org.canova.api.io.data.FloatWritable
toInt() - Method in class org.canova.api.io.data.IntWritable
toInt() - Method in class org.canova.api.io.data.LongWritable
toInt() - Method in class org.canova.api.io.data.NullWritable
toInt() - Method in class org.canova.api.io.data.Text
toInt() - Method in class org.canova.api.split.BaseInputSplit
toInt() - Method in class org.canova.api.split.CollectionInputSplit
toInt() - Method in class org.canova.api.split.InputStreamInputSplit
toInt() - Method in class org.canova.api.split.NumberedFileInputSplit
toInt() - Method in class org.canova.api.split.StringSplit
toInt() - Method in class org.canova.api.writable.ArrayWritable
toInt() - Method in interface org.canova.api.writable.Writable: Convert Writable to int.
toLogSpace() - Method in class org.canova.api.berkeley.Counter
toLong() - Method in class org.canova.api.conf.Configuration
toLong() - Method in class org.canova.api.formats.input.BaseInputFormat
toLong() - Method in class org.canova.api.io.data.BooleanWritable
toLong() - Method in class org.canova.api.io.data.ByteWritable
toLong() - Method in class org.canova.api.io.data.DoubleWritable
toLong() - Method in class org.canova.api.io.data.FloatWritable
toLong() - Method in class org.canova.api.io.data.IntWritable
toLong() - Method in class org.canova.api.io.data.LongWritable
toLong() - Method in class org.canova.api.io.data.NullWritable
toLong() - Method in class org.canova.api.io.data.Text
toLong() - Method in class org.canova.api.split.BaseInputSplit
toLong() - Method in class org.canova.api.split.CollectionInputSplit
toLong() - Method in class org.canova.api.split.InputStreamInputSplit
toLong() - Method in class org.canova.api.split.NumberedFileInputSplit
toLong() - Method in class org.canova.api.split.StringSplit
toLong() - Method in class org.canova.api.writable.ArrayWritable
toLong() - Method in interface org.canova.api.writable.Writable: Convert Writable to long.
toRecord(double[]) - Static method in class org.canova.api.util.RecordUtils
toRecord(float[]) - Static method in class org.canova.api.util.RecordUtils
toString() - Method in class org.canova.api.berkeley.Counter: Returns a string representation with the keys ordered by decreasing counts.
toString(int) - Method in class org.canova.api.berkeley.Counter: Returns a string representation which includes no more than the maxKeysToPrint elements with largest counts.
toString(int, boolean) - Method in class org.canova.api.berkeley.Counter: Returns a string representation which includes no more than the maxKeysToPrint elements with largest counts and optionally prints one element per line.
toString(int) - Method in class org.canova.api.berkeley.CounterMap
toString() - Method in class org.canova.api.berkeley.CounterMap
toString(Collection<String>) - Method in class org.canova.api.berkeley.CounterMap
toString() - Method in class org.canova.api.berkeley.Pair
toString() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a representation of the queue in decreasing priority order.
toString(int, boolean) - Method in class org.canova.api.berkeley.PriorityQueue: Returns a representation of the queue in decreasing priority order, displaying at most maxKeysToPrint elements and optionally printing one element per line.
toString() - Method in class org.canova.api.berkeley.Triple
toString() - Method in class org.canova.api.conf.Configuration.IntegerRanges
toString() - Method in class org.canova.api.conf.Configuration
toString() - Method in class org.canova.api.io.data.BooleanWritable
toString() - Method in class org.canova.api.io.data.ByteWritable
toString() - Method in class org.canova.api.io.data.DoubleWritable
toString() - Method in class org.canova.api.io.data.FloatWritable
toString() - Method in class org.canova.api.io.data.IntWritable
toString() - Method in class org.canova.api.io.data.LongWritable
toString() - Method in class org.canova.api.io.data.NullWritable
toString() - Method in class org.canova.api.io.data.Text: Convert text back to string
toString() - Method in class org.canova.api.records.Buffer
toString(String) - Method in class org.canova.api.records.Buffer: Convert the byte buffer to a string an specific character encoding
toString() - Method in class org.canova.api.util.Index
toString() - Method in class org.canova.api.util.MultiDimensionalMap
toStringSortedByKeys() - Method in class org.canova.api.berkeley.Counter
toStringTabSeparated() - Method in class org.canova.api.berkeley.Counter
totalCount() - Method in class org.canova.api.berkeley.Counter: Finds the total of all counts in the counter.
totalCount() - Method in class org.canova.api.berkeley.CounterMap: Returns the total of all counts in sub-counters.
totalNumExamples - Variable in class org.canova.api.split.LimitFileSplit
totalSize() - Method in class org.canova.api.berkeley.CounterMap: Returns the total number of (key, value) entries in the CounterMap (not their total counts).
Transform(Iterator<S>) - Constructor for class org.canova.api.berkeley.Iterators.Transform
transform(S) - Method in class org.canova.api.berkeley.Iterators.Transform
transform(Collection<Writable>) - Method in interface org.canova.api.vector.Vectorizer: Transform a record in to a vector
TransformingIterator(Iterator<I>, MyMethod<I, O>) - Constructor for class org.canova.api.berkeley.Iterators.TransformingIterator
TreeMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.TreeMapFactory
treeSet() - Static method in class org.canova.api.util.MultiDimensionalSet
trim(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Returns s if it's at most maxWidth chars, otherwise chops right side to fit.
trim(Object, int) - Static method in class org.canova.api.berkeley.StringUtils
Triple<S,T,U> - Class in org.canova.api.berkeley
Triple(S, T, U) - Constructor for class org.canova.api.berkeley.Triple
truncate(int, int, int) - Static method in class org.canova.api.berkeley.StringUtils: This returns a string from decimal digit smallestDigit to decimal digit biggest digit.
truncate() - Method in class org.canova.api.records.Buffer: Change the capacity of the backing store to be the same as the current count of buffer.

U

unEscapeString(String) - Static method in class org.canova.api.util.StringUtils: Unescape commas in the string using the default escape char
unEscapeString(String, char, char) - Static method in class org.canova.api.util.StringUtils: Unescape charToEscape in the string with the escape char escapeChar
unEscapeString(String, char, char[]) - Static method in class org.canova.api.util.StringUtils
uniform(Random, double, double) - Static method in class org.canova.api.util.MathUtils: Generate a uniform random number from the given rng
union(Set<? extends T>, Set<? extends T>) - Static method in class org.canova.api.util.SetUtils
UnknownFormatException - Exception in org.canova.api.exceptions
UnknownFormatException() - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String, Throwable) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(Throwable) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
unsafeAdd(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
unsafeSubtract(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
unzipFileTo(String, String) - Static method in class org.canova.api.util.ArchiveUtils: Extracts files to the specified destination
uriToString(URI[]) - Static method in class org.canova.api.util.StringUtils
utf8Length(String) - Static method in class org.canova.api.io.data.Text: For the given string, returns the number of UTF-8 bytes required to encode the string.
Utils - Class in org.canova.api.records: Various utility functions for Hadooop record I/O runtime.

V

validateUTF8(byte[]) - Static method in class org.canova.api.io.data.Text: Check if a byte array contains valid utf-8
validateUTF8(byte[], int, int) - Static method in class org.canova.api.io.data.Text: Check to see if a byte array is valid utf-8
value - Variable in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix
valueOf(String) - Static method in enum org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader.LineErrorHandling: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Returns the enum constant of this type with the specified name.
valueOf(char) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix
values() - Static method in enum org.canova.api.records.reader.impl.regex.RegexSequenceRecordReader.LineErrorHandling: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Collection view of the values contained in this map.
values() - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Returns an array containing the constants of this enum type, in the order they are declared.
Vectorizer<VECTOR_TYPE> - Interface in org.canova.api.vector: Vectorizer of a particular type.
Vectorizer.RecordCallBack - Interface in org.canova.api.vector: On record call back.
vectorLength(double[]) - Static method in class org.canova.api.util.MathUtils: Returns the vector length (sqrt(sum(x_i))

W

w_0(double[], double[], int) - Static method in class org.canova.api.util.MathUtils
w_1(double[], double[], int) - Static method in class org.canova.api.util.MathUtils
WeakHashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.WeakHashMapFactory
weightsFor(List<Double>) - Static method in class org.canova.api.util.MathUtils: This returns the minimized loss values for a given vector.
weightsFor(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the minimized loss values for a given vector.
Writable - Interface in org.canova.api.writable: A serializable object which implements a simple, efficient, serialization protocol, based on DataInput and DataOutput.
WritableComparable<T> - Interface in org.canova.api.io: A Writable which is also Comparable.
WritableComparator - Class in org.canova.api.io: A Comparator for WritableComparables.
WritableComparator(Class<? extends WritableComparable>) - Constructor for class org.canova.api.io.WritableComparator: Construct for a WritableComparable implementation.
WritableComparator(Class<? extends WritableComparable>, boolean) - Constructor for class org.canova.api.io.WritableComparator
WritableConverter - Interface in org.canova.api.io: Convert a writable to another writable (used for say: transitioning dates or categorical to numbers)
WritableConverterException - Exception in org.canova.api.io.converters: Writable converter exception represents an error for being unable to convert a writable
WritableConverterException() - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String, Throwable) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(Throwable) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.io.converters.WritableConverterException
Writables - Class in org.canova.api.writable: Util class for writable conversions
Writables() - Constructor for class org.canova.api.writable.Writables
writables(Collection<String>) - Static method in class org.canova.api.writable.Writables
WritableUtils - Class in org.canova.api.io
WritableUtils() - Constructor for class org.canova.api.io.WritableUtils
write(DataOutput) - Method in class org.canova.api.conf.Configuration
write(DataOutput) - Method in class org.canova.api.formats.input.BaseInputFormat
write(DataOutput) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
write(DataOutput) - Method in class org.canova.api.formats.input.impl.LineInputFormat
write(DataOutput) - Method in class org.canova.api.io.data.BooleanWritable
write(DataOutput) - Method in class org.canova.api.io.data.ByteWritable
write(DataOutput) - Method in class org.canova.api.io.data.DoubleWritable
write(DataOutput) - Method in class org.canova.api.io.data.FloatWritable
write(DataOutput) - Method in class org.canova.api.io.data.IntWritable
write(DataOutput) - Method in class org.canova.api.io.data.LongWritable
write(DataOutput) - Method in class org.canova.api.io.data.NullWritable
write(DataOutput) - Method in class org.canova.api.io.data.Text: serialize write this object to out length uses zero-compressed encoding
write(DataInput, int) - Method in class org.canova.api.io.DataOutputBuffer: Writes bytes from a DataInput directly into the buffer.
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.CSVRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.FileRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.LibSvmRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.LineRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.MatlabRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.SVMLightRecordWriter
write(Collection<Writable>) - Method in interface org.canova.api.records.writer.RecordWriter: Write a record
write(DataOutput) - Method in class org.canova.api.split.CollectionInputSplit
write(DataOutput) - Method in class org.canova.api.split.FileSplit
write(DataOutput) - Method in class org.canova.api.split.InputStreamInputSplit
write(DataOutput) - Method in class org.canova.api.split.NumberedFileInputSplit
write(DataOutput) - Method in class org.canova.api.split.StringSplit
write(DataOutput) - Method in interface org.canova.api.writable.Writable: Serialize the fields of this object to out.
writeCompressedByteArray(DataOutput, byte[]) - Static method in class org.canova.api.io.WritableUtils
writeCompressedString(DataOutput, String) - Static method in class org.canova.api.io.WritableUtils
writeCompressedStringArray(DataOutput, String[]) - Static method in class org.canova.api.io.WritableUtils
writeEnum(DataOutput, Enum<?>) - Static method in class org.canova.api.io.WritableUtils: writes String value of enum to DataOutput.
writeString(DataOutput, String) - Static method in class org.canova.api.io.data.Text: Write a UTF8 encoded string to out
writeString(DataOutput, String) - Static method in class org.canova.api.io.WritableUtils
writeStringArray(DataOutput, String[]) - Static method in class org.canova.api.io.WritableUtils
writeTo(OutputStream) - Method in class org.canova.api.io.DataOutputBuffer: Write to a file stream
writeTo - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
writeVInt(DataOutput, int) - Static method in class org.canova.api.io.WritableUtils: Serializes an integer to a binary stream with zero-compressed encoding.
writeVInt(DataOutput, int) - Static method in class org.canova.api.records.Utils: Serializes an int to a binary stream with zero-compressed encoding.
writeVLong(DataOutput, long) - Static method in class org.canova.api.io.WritableUtils: Serializes a long to a binary stream with zero-compressed encoding.
writeVLong(DataOutput, long) - Static method in class org.canova.api.records.Utils: Serializes a long to a binary stream with zero-compressed encoding.
writeXml(OutputStream) - Method in class org.canova.api.conf.Configuration: Write out the non-default properties in this configuration to the give OutputStream.

X

xVals(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the x values of the given vector.

Y

yVals(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the odd indexed values for the given vector

Z

zip(Iterator<S>, Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators

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