Package adams.data.conversion

Class SpreadSheetToHeatmap

  • All Implemented Interfaces:
    adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.QuickInfoSupporter, adams.core.ShallowCopySupporter<adams.data.conversion.AbstractConversion>, adams.core.SizeOfHandler, adams.core.Stoppable, adams.data.conversion.Conversion, Serializable
    public class SpreadSheetToHeatmap
extends adams.data.conversion.AbstractConversion
    Turns an all-numeric spreadsheet into a heatmap.
    Missing values/cells are tolerated and replaced with the specified value for missing values.

    Valid options are: 

    -D <int> (property: debugLevel)
    The greater the number the more additional info the scheme may output to 
    the console (0 = off).
    default: 0
    minimum: 0
 
    -missing-value <double> (property: missingValue)
    The value to use in case of missing values/cells.
    default: 0.0
    Version:
    $Revision$
    Author:
    fracpete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected double m_MissingValue
      the default value for missing values.

      • Fields inherited from class adams.data.conversion.AbstractConversion

        m_Input, m_Output, m_Owner, m_Stopped

      • Fields inherited from class adams.core.option.AbstractOptionHandler

        m_OptionManager

      • Fields inherited from class adams.core.logging.LoggingObject

        m_Logger, m_LoggingIsEnabled, m_LoggingLevel

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Class accepts()
      Returns the class that is accepted as input.
      void defineOptions()
      Adds options to the internal list of options.
      protected Object doConvert()
      Performs the actual conversion.
      Class generates()
      Returns the class that is generated as output.
      double getMissingValue()
      Returns the value to use for missing values/celss.
      String globalInfo()
      Returns a string describing the object.
      String missingValueTipText()
      Returns the tip text for this property.
      void setMissingValue​(double value)
      Sets the value to use for missing values/cells.

      • Methods inherited from class adams.data.conversion.AbstractConversion

        checkData, cleanUp, convert, getAdditionalInformation, getInput, getInput, getOutput, getOutput, getOwner, getQuickInfo, reset, setInput, setOwner, shallowCopy, shallowCopy, stopExecution

      • Methods inherited from class adams.core.option.AbstractOptionHandler

        cleanUpOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, initialize, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString

      • Methods inherited from class adams.core.logging.LoggingObject

        configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

      • Methods inherited from interface adams.core.logging.LoggingLevelHandler

        getLoggingLevel

    • Field Detail

      • m_MissingValue

        protected double m_MissingValue
        the default value for missing values.

    • Constructor Detail

      • SpreadSheetToHeatmap

        public SpreadSheetToHeatmap()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing the object.
        Specified by:
        globalInfo in interface adams.core.GlobalInfoSupporter
        Specified by:
        globalInfo in class adams.core.option.AbstractOptionHandler
        Returns:
        a description suitable for displaying in the gui

      • defineOptions

        public void defineOptions()
        Adds options to the internal list of options.
        Specified by:
        defineOptions in interface adams.core.option.OptionHandler
        Overrides:
        defineOptions in class adams.core.option.AbstractOptionHandler

      • setMissingValue

        public void setMissingValue​(double value)
        Sets the value to use for missing values/cells.
        Parameters:
        value - the value

      • getMissingValue

        public double getMissingValue()
        Returns the value to use for missing values/celss.
        Returns:
        the value

      • missingValueTipText

        public String missingValueTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • accepts

        public Class accepts()
        Returns the class that is accepted as input.
        Specified by:
        accepts in interface adams.data.conversion.Conversion
        Specified by:
        accepts in class adams.data.conversion.AbstractConversion
        Returns:
        the class

      • generates

        public Class generates()
        Returns the class that is generated as output.
        Specified by:
        generates in interface adams.data.conversion.Conversion
        Specified by:
        generates in class adams.data.conversion.AbstractConversion
        Returns:
        the class

      • doConvert

        protected Object doConvert()
                    throws Exception
        Performs the actual conversion.
        Specified by:
        doConvert in class adams.data.conversion.AbstractConversion
        Returns:
        the converted data
        Throws:
        Exception - if something goes wrong with the conversion