Package adams.data.io.input

Class FloatMatrixHeatmapReader

  • All Implemented Interfaces:
    adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.io.FileFormatHandler, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.ShallowCopySupporter<adams.data.io.input.AbstractDataContainerReader>, adams.core.SizeOfHandler, Serializable, Comparable
    public class FloatMatrixHeatmapReader
extends AbstractHeatmapReader
    Reads heat map files (2-D array of single precision floating point numbers).

    Valid options are: 

    -D <int> (property: debugLevel)
    The greater the number the more additional info the scheme may output to
    the console (0 = off).
    default: 0
    minimum: 0
 
    -input <adams.core.io.PlaceholderFile> (property: input)
    The file to read and turn into a container.
    default: ${CWD}
 
    -create-dummy-report (property: createDummyReport)
    If true, then a dummy report is created if none present.
 
    -height <int> (property: height)
    The height of the heatmap.
    default: 240
    minimum: 1
 
    -width <int> (property: width)
    The width of the heatmap.
    default: 320
    minimum: 1
    Version:
    $Revision$
    Author:
    fracpete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected int m_Height
      the height of the heatmap.
      protected int m_Width
      the width of the heatmap.

      • Fields inherited from class adams.data.io.input.AbstractDataContainerReader

        m_CreateDummyReport, m_Input, m_InputIsFile, m_Processed, m_ReadData

      • Fields inherited from class adams.core.option.AbstractOptionHandler

        m_OptionManager

      • Fields inherited from class adams.core.logging.LoggingObject

        m_Logger, m_LoggingIsEnabled, m_LoggingLevel

    • Field Detail

      • m_Height

        protected int m_Height
        the height of the heatmap.

      • m_Width

        protected int m_Width
        the width of the heatmap.

    • Constructor Detail

      • FloatMatrixHeatmapReader

        public FloatMatrixHeatmapReader()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing the object.
        Specified by:
        globalInfo in interface adams.core.GlobalInfoSupporter
        Specified by:
        globalInfo in class adams.core.option.AbstractOptionHandler
        Returns:
        a description suitable for displaying in the gui

      • defineOptions

        public void defineOptions()
        Adds options to the internal list of options.
        Specified by:
        defineOptions in interface adams.core.option.OptionHandler
        Overrides:
        defineOptions in class AbstractHeatmapReader

      • getDefaultHeight

        protected int getDefaultHeight()
        Returns the default height of the heatmap.
        Returns:
        the default height

      • setHeight

        public void setHeight​(int value)
        Sets the height of the heatmap.
        Parameters:
        value - the height

      • getHeight

        public int getHeight()
        Returns the height of the heatmap.
        Returns:
        the height

      • heightTipText

        public String heightTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • getDefaultWidth

        protected int getDefaultWidth()
        Returns the default width of the heatmap.
        Returns:
        the default width

      • setWidth

        public void setWidth​(int value)
        Sets the width of the heatmap.
        Parameters:
        value - the width

      • getWidth

        public int getWidth()
        Returns the width of the heatmap.
        Returns:
        the width

      • widthTipText

        public String widthTipText()
        Returns the tip text for this property.
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • getFormatDescription

        public String getFormatDescription()
        Returns a string describing the format (used in the file chooser).
        Specified by:
        getFormatDescription in interface adams.core.io.FileFormatHandler
        Specified by:
        getFormatDescription in class adams.data.io.input.AbstractDataContainerReader<Heatmap>
        Returns:
        a description suitable for displaying in the file chooser

      • getFormatExtensions

        public String[] getFormatExtensions()
        Returns the extension(s) of the format.
        Specified by:
        getFormatExtensions in interface adams.core.io.FileFormatHandler
        Specified by:
        getFormatExtensions in class adams.data.io.input.AbstractDataContainerReader<Heatmap>
        Returns:
        the extension(s) (without the dot!)

      • readData

        protected void readData()
        Performs the actual reading.
        Specified by:
        readData in class adams.data.io.input.AbstractDataContainerReader<Heatmap>