Package adams.data.imagesegmentation.operation

Class CompareAnnotationWithPrediction

java.lang.Object

adams.core.logging.LoggingObject

adams.core.logging.CustomLoggingLevelObject

adams.core.option.AbstractOptionHandler

adams.data.imagesegmentation.operation.AbstractImageSegmentationContainerOperation

adams.data.imagesegmentation.operation.CompareAnnotationWithPrediction

All Implemented Interfaces:

Destroyable, GlobalInfoSupporter, LoggingLevelHandler, LoggingSupporter, OptionHandler, QuickInfoSupporter, SizeOfHandler, Serializable

public class CompareAnnotationWithPrediction
extends AbstractImageSegmentationContainerOperation

Compares a prediction (first container) with the annotation (second container) and outputs a color image per label that shows the correct overlaps, the missed annotations and additionally predicted pixels.

Author:

FracPete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected Color	m_BackgroundColor	the background color to use.
protected Color	m_ColorAdditional	the color for additional predictions.
protected Color	m_ColorMissed	the color for missed annotations.
protected Color	m_ColorOverlap	the color for correct overlaps.
protected BaseString[]	m_Labels	the labels to analyze (all if none specified).

Fields inherited from class adams.core.option.AbstractOptionHandler

m_OptionManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
CompareAnnotationWithPrediction()

Method Summary

Modifier and Type	Method	Description
String	backgroundColorTipText()	Returns the tip text for this property.
String	colorAdditionalTipText()	Returns the tip text for this property.
String	colorMissedTipText()	Returns the tip text for this property.
String	colorOverlapTipText()	Returns the tip text for this property.
void	defineOptions()	Adds options to the internal list of options.
protected Object	doProcess(ImageSegmentationContainer[] containers)	Performs the actual processing of the containers.
protected BufferedImageContainer	generate(int width, int height, int[] predPixels, int[] annoPixels)	Compares the two pixel arrays and generates an images from it.
Class	generates()	The type of data that is generated.
Color	getBackgroundColor()	Returns the color to use as background.
Color	getColorAdditional()	Returns the color for predictions that had no annotations.
Color	getColorMissed()	Returns the color for missed annotations.
Color	getColorOverlap()	Returns the color for correct overlaps.
BaseString[]	getLabels()	Returns the labels to generate the images for instead of all.
String	getQuickInfo()	Returns a quick info about the actor, which will be displayed in the GUI.
String	globalInfo()	Returns a string describing the object.
String	labelsTipText()	Returns the tip text for this property.
int	maxNumContainersRequired()	Returns the maximum number of containers that are required for the operation.
int	minNumContainersRequired()	Returns the minimum number of containers that are required for the operation.
void	setBackgroundColor(Color value)	Sets the color to use as background.
void	setColorAdditional(Color value)	Sets the color for predictions that had no annotations.
void	setColorMissed(Color value)	Sets the color for missed annotations.
void	setColorOverlap(Color value)	Sets the color for correct overlaps.
void	setLabels(BaseString[] value)	Sets the labels to generate the images for instead of all.

Methods inherited from class adams.data.imagesegmentation.operation.AbstractImageSegmentationContainerOperation

check, checkSameDimensions, checkSameDimensions, process

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, initialize, loggingLevelTipText, newOptionManager, reset, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.logging.LoggingLevelHandler

getLoggingLevel

Field Detail

m_Labels

protected BaseString[] m_Labels

the labels to analyze (all if none specified).

m_BackgroundColor

protected Color m_BackgroundColor

the background color to use.

m_ColorOverlap

protected Color m_ColorOverlap

the color for correct overlaps.

m_ColorMissed

protected Color m_ColorMissed

the color for missed annotations.

m_ColorAdditional

protected Color m_ColorAdditional

the color for additional predictions.

Constructor Detail

CompareAnnotationWithPrediction

public CompareAnnotationWithPrediction()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in interface GlobalInfoSupporter

Specified by:

globalInfo in class AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

defineOptions

public void defineOptions()

Adds options to the internal list of options.

Specified by:

defineOptions in interface OptionHandler

Overrides:

defineOptions in class AbstractOptionHandler

setLabels

public void setLabels(BaseString[] value)

Sets the labels to generate the images for instead of all.

Parameters:

value - the labels

getLabels

public BaseString[] getLabels()

Returns the labels to generate the images for instead of all.

Returns:

the labels

labelsTipText

public String labelsTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setBackgroundColor

public void setBackgroundColor(Color value)

Sets the color to use as background.

Parameters:

value - the background color

getBackgroundColor

public Color getBackgroundColor()

Returns the color to use as background.

Returns:

the background color

backgroundColorTipText

public String backgroundColorTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setColorOverlap

public void setColorOverlap(Color value)

Sets the color for correct overlaps.

Parameters:

value - the color

getColorOverlap

public Color getColorOverlap()

Returns the color for correct overlaps.

Returns:

the color

colorOverlapTipText

public String colorOverlapTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setColorMissed

public void setColorMissed(Color value)

Sets the color for missed annotations.

Parameters:

value - the color

getColorMissed

public Color getColorMissed()

Returns the color for missed annotations.

Returns:

the color

colorMissedTipText

public String colorMissedTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

setColorAdditional

public void setColorAdditional(Color value)

Sets the color for predictions that had no annotations.

Parameters:

value - the color

getColorAdditional

public Color getColorAdditional()

Returns the color for predictions that had no annotations.

Returns:

the color

colorAdditionalTipText

public String colorAdditionalTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

getQuickInfo

public String getQuickInfo()

Returns a quick info about the actor, which will be displayed in the GUI.

Specified by:

getQuickInfo in interface QuickInfoSupporter

Overrides:

getQuickInfo in class AbstractImageSegmentationContainerOperation

Returns:

null if no info available, otherwise short string

minNumContainersRequired

public int minNumContainersRequired()

Returns the minimum number of containers that are required for the operation.

Specified by:

minNumContainersRequired in class AbstractImageSegmentationContainerOperation

Returns:

the number of containers that are required, <= 0 means no lower limit

maxNumContainersRequired

public int maxNumContainersRequired()

Returns the maximum number of containers that are required for the operation.

Specified by:

maxNumContainersRequired in class AbstractImageSegmentationContainerOperation

Returns:

the number of containers that are required, <= 0 means no upper limit

generates

public Class generates()

The type of data that is generated.

Specified by:

generates in class AbstractImageSegmentationContainerOperation

Returns:

the class

generate

protected BufferedImageContainer generate(int width,
                                          int height,
                                          int[] predPixels,
                                          int[] annoPixels)

Compares the two pixel arrays and generates an images from it.

Parameters:

predPixels - the prediction pixels

annoPixels - the annotation pixels

Returns:

the statistics

doProcess

protected Object doProcess(ImageSegmentationContainer[] containers)

Performs the actual processing of the containers.

Specified by:

doProcess in class AbstractImageSegmentationContainerOperation

Parameters:

containers - the containers to process

Returns:

the generated data