Package adams.data.io.input

Class BlueChannelImageSegmentationReader

java.lang.Object

adams.core.logging.LoggingObject

adams.core.logging.CustomLoggingLevelObject

adams.core.option.AbstractOptionHandler

adams.data.io.input.AbstractImageSegmentationAnnotationReader

adams.data.io.input.AbstractPNGAnnotationImageSegmentationReader

adams.data.io.input.AbstractCustomPNGAnnotationImageSegmentationReader

adams.data.io.input.BlueChannelImageSegmentationReader

All Implemented Interfaces:

Destroyable, GlobalInfoSupporter, FileFormatHandler, LenientModeSupporter, LoggingLevelHandler, LoggingSupporter, OptionHandler, SizeOfHandler, ImageSegmentationAnnotationReader, ImageSegmentationAnnotationReaderWithLayerNames, Serializable

public class BlueChannelImageSegmentationReader
extends AbstractCustomPNGAnnotationImageSegmentationReader

The layers are stored in the blue channel, with 0 being the background.

Author:

FracPete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.data.io.input.AbstractCustomPNGAnnotationImageSegmentationReader

m_Reader

Fields inherited from class adams.data.io.input.AbstractPNGAnnotationImageSegmentationReader

m_LayerNames, m_Lenient, m_SkipFirstLayer

Fields inherited from class adams.data.io.input.AbstractImageSegmentationAnnotationReader

m_AlternativeAnnotationDir, m_UseAlternativeAnnotationDir

Fields inherited from class adams.core.option.AbstractOptionHandler

m_OptionManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
BlueChannelImageSegmentationReader()

Method Summary

Modifier and Type	Method	Description
protected ImageSegmentationContainer	doReadLayers(PlaceholderFile file)	Reads the image segmentation annotations.
ImageSegmentationAnnotationWriter	getCorrespondingWriter()	Returns, if available, the corresponding writer.
String	getFormatDescription()	Returns a string describing the format (used in the file chooser).
String	globalInfo()	Returns a string describing the object.

Methods inherited from class adams.data.io.input.AbstractCustomPNGAnnotationImageSegmentationReader

defineOptions, getDefaultReader, getReader, readerTipText, readPNG, setReader

Methods inherited from class adams.data.io.input.AbstractPNGAnnotationImageSegmentationReader

check, doRead, getDefaultFormatExtension, getFormatExtensions, getLayerNames, getLenient, getSkipFirstLayer, layerNamesTipText, lenientTipText, locatePNG, newContainer, setLayerNames, setLenient, setSkipFirstLayer, skipFirstLayerTipText

Methods inherited from class adams.data.io.input.AbstractImageSegmentationAnnotationReader

alternativeAnnotationDirTipText, getAlternativeAnnotationDir, getUseAlternativeAnnotationDir, read, setAlternativeAnnotationDir, setUseAlternativeAnnotationDir, useAlternativeAnnotationDirTipText

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, initialize, loggingLevelTipText, newOptionManager, reset, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.Destroyable

destroy

Methods inherited from interface adams.data.io.input.ImageSegmentationAnnotationReader

getAlternativeAnnotationDir, getUseAlternativeAnnotationDir, read, setAlternativeAnnotationDir, setUseAlternativeAnnotationDir

Methods inherited from interface adams.core.logging.LoggingLevelHandler

getLoggingLevel

Methods inherited from interface adams.core.option.OptionHandler

cleanUpOptions, getOptionManager, toCommandLine

Constructor Detail

BlueChannelImageSegmentationReader

public BlueChannelImageSegmentationReader()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in interface GlobalInfoSupporter

Specified by:

globalInfo in class AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

getCorrespondingWriter

public ImageSegmentationAnnotationWriter getCorrespondingWriter()

Returns, if available, the corresponding writer.

Specified by:

getCorrespondingWriter in interface ImageSegmentationAnnotationReader

Specified by:

getCorrespondingWriter in class AbstractImageSegmentationAnnotationReader

Returns:

the writer, null if none available

getFormatDescription

public String getFormatDescription()

Returns a string describing the format (used in the file chooser).

Returns:

a description suitable for displaying in the file chooser

doReadLayers

protected ImageSegmentationContainer doReadLayers(PlaceholderFile file)

Reads the image segmentation annotations.

Specified by:

doReadLayers in class AbstractPNGAnnotationImageSegmentationReader

Parameters:

file - the file to read from

Returns:

the annotations