Package adams.data.io.input

Class IndividualImageSegmentationLayerReader

java.lang.Object

adams.core.logging.LoggingObject

adams.core.logging.CustomLoggingLevelObject

adams.core.option.AbstractOptionHandler

adams.data.io.input.AbstractImageSegmentationAnnotationReader

adams.data.io.input.IndividualImageSegmentationLayerReader

All Implemented Interfaces:

Destroyable, GlobalInfoSupporter, FileFormatHandler, LoggingLevelHandler, LoggingSupporter, OptionHandler, SizeOfHandler, ImageSegmentationAnnotationReader, Serializable

public class IndividualImageSegmentationLayerReader
extends AbstractImageSegmentationAnnotationReader

Uses a JPG as base image and indexed PNG files for the individual layers (0 = background, 1 = annotation).

Author:

FracPete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected AbstractBufferedImageTransformer	m_LayerTransformer	for processing the layers.

Fields inherited from class adams.data.io.input.AbstractImageSegmentationAnnotationReader

m_AlternativeAnnotationDir, m_UseAlternativeAnnotationDir

Fields inherited from class adams.core.option.AbstractOptionHandler

m_OptionManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
IndividualImageSegmentationLayerReader()

Method Summary

Modifier and Type	Method	Description
void	defineOptions()	Adds options to the internal list of options.
protected ImageSegmentationContainer	doRead(PlaceholderFile file)	Reads the image segmentation annotations.
ImageSegmentationAnnotationWriter	getCorrespondingWriter()	Returns, if available, the corresponding writer.
String	getDefaultFormatExtension()	Returns the default extension of the format.
String	getFormatDescription()	Returns a string describing the format (used in the file chooser).
String[]	getFormatExtensions()	Returns the extension(s) of the format.
AbstractBufferedImageTransformer	getLayerTransformer()	Returns the image transformer to apply to the layer images.
String	globalInfo()	Returns a string describing the object.
String	layerTransformerTipText()	Returns the tip text for this property.
void	setLayerTransformer(AbstractBufferedImageTransformer value)	Sets the image transformer to apply to the layer images.

Methods inherited from class adams.data.io.input.AbstractImageSegmentationAnnotationReader

alternativeAnnotationDirTipText, check, getAlternativeAnnotationDir, getUseAlternativeAnnotationDir, read, setAlternativeAnnotationDir, setUseAlternativeAnnotationDir, useAlternativeAnnotationDirTipText

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, initialize, loggingLevelTipText, newOptionManager, reset, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.Destroyable

destroy

Methods inherited from interface adams.core.logging.LoggingLevelHandler

getLoggingLevel

Methods inherited from interface adams.core.option.OptionHandler

cleanUpOptions, getOptionManager, toCommandLine

Field Detail

m_LayerTransformer

protected AbstractBufferedImageTransformer m_LayerTransformer

for processing the layers.

Constructor Detail

IndividualImageSegmentationLayerReader

public IndividualImageSegmentationLayerReader()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in interface GlobalInfoSupporter

Specified by:

globalInfo in class AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

defineOptions

public void defineOptions()

Adds options to the internal list of options.

Specified by:

defineOptions in interface OptionHandler

Overrides:

defineOptions in class AbstractImageSegmentationAnnotationReader

setLayerTransformer

public void setLayerTransformer(AbstractBufferedImageTransformer value)

Sets the image transformer to apply to the layer images.

Parameters:

value - the image width

getLayerTransformer

public AbstractBufferedImageTransformer getLayerTransformer()

Returns the image transformer to apply to the layer images.

Returns:

the transformer

layerTransformerTipText

public String layerTransformerTipText()

Returns the tip text for this property.

Returns:

tip text for this property suitable for displaying in the GUI or for listing the options.

getFormatDescription

public String getFormatDescription()

Returns a string describing the format (used in the file chooser).

Returns:

a description suitable for displaying in the file chooser

getFormatExtensions

public String[] getFormatExtensions()

Returns the extension(s) of the format.

Returns:

the extension (without the dot!)

getDefaultFormatExtension

public String getDefaultFormatExtension()

Returns the default extension of the format.

Returns:

the default extension (without the dot!)

getCorrespondingWriter

public ImageSegmentationAnnotationWriter getCorrespondingWriter()

Returns, if available, the corresponding writer.

Specified by:

getCorrespondingWriter in interface ImageSegmentationAnnotationReader

Specified by:

getCorrespondingWriter in class AbstractImageSegmentationAnnotationReader

Returns:

the writer, null if none available

doRead

protected ImageSegmentationContainer doRead(PlaceholderFile file)

Reads the image segmentation annotations.

Specified by:

doRead in class AbstractImageSegmentationAnnotationReader

Parameters:

file - the file to read from

Returns:

the annotations