Package adams.db

Class ReportTableByDBID<R extends Report,F extends AbstractField>

java.lang.Object

adams.core.logging.LoggingObject

adams.db.generic.SQL

adams.db.AbstractTable

adams.db.AbstractIndexedTable

adams.db.ReportTableByDBID<R,F>

Type Parameters:

R - the type of reports to handle

F - the type of fields to handle

All Implemented Interfaces:

LoggingSupporter, SizeOfHandler, DatabaseConnectionProvider, DatabaseConnectionUser, FieldProvider<F>, ReportProvider<R,Integer>, ReportProviderByDBID<R>, SQLIntf, TableInterface, DatabaseConnectionChangeListener, Serializable

public abstract class ReportTableByDBID<R extends Report,F extends AbstractField>
extends AbstractIndexedTable
implements FieldProvider<F>, ReportProviderByDBID<R>

Abstract ancestor for classes that provide access to reports stored in tables.

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.db.AbstractIndexedTable

m_init

Fields inherited from class adams.db.AbstractTable

FILENAME, m_Properties, m_TableName

Fields inherited from class adams.db.generic.SQL

m_DatabaseConnection, m_Debug, m_TableManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Fields inherited from interface adams.db.SQLIntf

FAKE_TABLE_NAME

Constructor Summary

Constructors

Constructor	Description
ReportTableByDBID(AbstractDatabaseConnection dbcon, String tableName)	Initializes the table class with the given table name.

Method Summary

Modifier and Type	Method	Description
protected Field	createField(String name, String type)	Creates a new Field object.
protected abstract boolean	doStore(Integer parent_id, R report)	Stores the report.
List<F>	getFields()	Returns all available fields.
protected Object	parse(AbstractField field, String s)	Parses the given string according to the given field's type.
boolean	remove(Report report)	Removes the report from the database.
boolean	remove(Integer id)	Removes the quantitation report from the database.
boolean	store(Integer parent_id, R report)	Stores the report.
boolean	store(Integer parent_id, R report, boolean removeExisting, boolean merge, Field[] overwrite)	Stores the report.

Methods inherited from class adams.db.AbstractIndexedTable

columnsMatch, columnsMatchTest, create, getAllColumns, getColumnMapping, getIndices, getTables, init, initTables, isThere, postCreate, select, select, selectDistinct, selectDistinct, truncate, update

Methods inherited from class adams.db.AbstractTable

columnExists, databaseConnectionStateChanged, getProperties, getTableName, isEnabled, tableExists, toString

Methods inherited from class adams.db.generic.SQL

columnExists, doSelect, drop, execute, executeGeneratedKeys, getDatabaseConnection, getDebug, getMaxColumnNameLength, getResultSet, getSimpleResultSet, prepareStatement, prepareStatement, prepareStatement, select, selectDistinct, selectDouble, selectInt, selectLong, selectString, selectStrings, setDebug, singleton, tableExists, truncate, update, updatePrefix

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.db.DatabaseConnectionProvider

getDatabaseConnection

Methods inherited from interface adams.db.FieldProvider

getFields

Methods inherited from interface adams.core.logging.LoggingSupporter

getLogger, isLoggingEnabled

Methods inherited from interface adams.db.ReportProviderByDBID

exists, getDBIDs, getIDs, getIDs, load

Constructor Detail

ReportTableByDBID

public ReportTableByDBID(AbstractDatabaseConnection dbcon,
                         String tableName)

Initializes the table class with the given table name.

Parameters:

dbcon - the database context this table is used in

tableName - the name of the table

Method Detail

createField

protected Field createField(String name,
                            String type)
                     throws Exception

Creates a new Field object.

Parameters:

name - the name of the field

type - the type of the field

Returns:

the generated field

Throws:

Exception - if the field type is not handled

parse

protected Object parse(AbstractField field,
                       String s)

Parses the given string according to the given field's type.

Parameters:

field - the field that specifies the type

s - the value to parse

Returns:

the parsed value

getFields

public List<F> getFields()

Returns all available fields.

Specified by:

getFields in interface FieldProvider<R extends Report>

Returns:

the list of fields

remove

public boolean remove(Report report)

Removes the report from the database.

Parameters:

report - the report to delete (and obtain the parent ID from)

Returns:

true if successfully removed

remove

public boolean remove(Integer id)

Removes the quantitation report from the database.

Specified by:

remove in interface ReportProvider<R extends Report,F extends AbstractField>

Specified by:

remove in interface ReportProviderByDBID<R extends Report>

Parameters:

id - ID of chromatogram

Returns:

true if successfully removed

store

public boolean store(Integer parent_id,
                     R report)

Stores the report. Always removes an already existing report first.

Specified by:

store in interface ReportProvider<R extends Report,F extends AbstractField>

Specified by:

store in interface ReportProviderByDBID<R extends Report>

Parameters:

parent_id - the parent_id of the report

report - the report

Returns:

true if successfully inserted

store

public boolean store(Integer parent_id,
                     R report,
                     boolean removeExisting,
                     boolean merge,
                     Field[] overwrite)

Stores the report. Report can be merged with already existing one or the existing one can be removed from the database first.

Specified by:

store in interface ReportProvider<R extends Report,F extends AbstractField>

Specified by:

store in interface ReportProviderByDBID<R extends Report>

Parameters:

parent_id - the parent_id of the report

report - the report

removeExisting - whether to remove existing an already existing report before storing it (has precedence over "merge")

merge - whether to merge the existing and the current

overwrite - fields to overwrite if in "merge" mode

Returns:

true if successfully inserted/updated

doStore

protected abstract boolean doStore(Integer parent_id,
                                   R report)

Stores the report. Either updates or inserts the fields.

Parameters:

parent_id - the parent_id of the report

report - the report

Returns:

true if successfully inserted