Package adams.gui.visualization.sequence

Class XYSequenceContainerManager

java.lang.Object

adams.gui.visualization.container.AbstractContainerManager<XYSequenceContainer>

adams.gui.visualization.sequence.XYSequenceContainerManager

All Implemented Interfaces:

ColorContainerManager<XYSequenceContainer>, NamedContainerManager, VisibilityContainerManager<XYSequenceContainer>, Serializable

Direct Known Subclasses:

SequencePlotContainerManager

public class XYSequenceContainerManager
extends AbstractContainerManager<XYSequenceContainer>
implements VisibilityContainerManager<XYSequenceContainer>, NamedContainerManager, ColorContainerManager<XYSequenceContainer>

A handler for the XY sequence containers.

Version:

$Revision$

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected ColorProvider	m_ColorProvider	the color provider for managing the colors.
protected ContainerListManager	m_Owner	the owning panel.

Fields inherited from class adams.gui.visualization.container.AbstractContainerManager

m_AllowRemoval, m_DataChangeListeners, m_FilteredList, m_List, m_SearchRegexp, m_SearchString, m_UpdateList, m_Updating

Constructor Summary

Constructors

Constructor	Description
XYSequenceContainerManager(ContainerListManager owner)	Initializes the manager.

Method Summary

Modifier and Type	Method	Description
void	add(XYSequenceContainer c)	Adds the given container to the list.
void	clear()	Clears the container list.
int	countVisible()	Returns the number of visible containers.
List<XYSequenceContainer>	getAllVisible()	Returns (a copy of) all currently stored containers.
Color	getColor(XYSequenceContainer cont)	Returns the color for the container.
ColorProvider	getColorProvider()	Returns the color provider to use.
ContainerListManager	getOwner()	Returns the owning panel.
XYSequenceContainer	getVisible(int index)	Returns the nth visible container.
int[]	getVisibleIndices()	Returns the indices of all visible containers.
int	indexOf(String id)	Determines the index of the sequence with the specified ID.
protected boolean	isMatch(XYSequenceContainer cont, String search, boolean regExp)	Returns whether the container matches the current search.
boolean	isVisible(int index)	Returns whether the container at the specified position is visible.
XYSequenceContainer	newContainer(Comparable o)	Returns a new container containing the given payload.
XYSequenceContainer	remove(int index)	Removes the container at the specified position.
void	setColorProvider(ColorProvider value)	Sets the color provider to use.
void	setVisible(int index, boolean visible)	Sets the specified container's visibility.

Methods inherited from class adams.gui.visualization.container.AbstractContainerManager

addAll, addDataChangeListener, clearSearch, contains, count, countFiltered, finishUpdate, finishUpdate, get, getAll, getAllowRemoval, getFiltered, getFilteredIndices, indexOf, indexOfFiltered, isFiltered, isFiltered, isUpdating, notifyDataChangeListeners, postAdd, postSet, preAdd, preSet, removeDataChangeListener, search, set, setAllowRemoval, startUpdate, toString, updateSearch, updateSearchOnUpdate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

m_Owner

protected ContainerListManager m_Owner

the owning panel.

m_ColorProvider

protected ColorProvider m_ColorProvider

the color provider for managing the colors.

Constructor Detail

XYSequenceContainerManager

public XYSequenceContainerManager(ContainerListManager owner)

Initializes the manager.

Parameters:

owner - the owning panel

Method Detail

getOwner

public ContainerListManager getOwner()

Returns the owning panel.

Returns:

the owner

setColorProvider

public void setColorProvider(ColorProvider value)

Sets the color provider to use.

Specified by:

setColorProvider in interface ColorContainerManager<XYSequenceContainer>

Parameters:

value - the color provider

getColorProvider

public ColorProvider getColorProvider()

Returns the color provider to use.

Specified by:

getColorProvider in interface ColorContainerManager<XYSequenceContainer>

Returns:

the color provider in use

getColor

public Color getColor(XYSequenceContainer cont)

Returns the color for the container.

Specified by:

getColor in interface ColorContainerManager<XYSequenceContainer>

Parameters:

cont - the container to get the color for

Returns:

the color

clear

public void clear()

Clears the container list.

Overrides:

clear in class AbstractContainerManager<XYSequenceContainer>

newContainer

public XYSequenceContainer newContainer(Comparable o)

Returns a new container containing the given payload.

Specified by:

newContainer in class AbstractContainerManager<XYSequenceContainer>

Parameters:

o - the payload to encapsulate

Returns:

the new container

add

public void add(XYSequenceContainer c)

Adds the given container to the list. Duplicates are ignored.

Overrides:

add in class AbstractContainerManager<XYSequenceContainer>

Parameters:

c - the container to add

remove

public XYSequenceContainer remove(int index)

Removes the container at the specified position.

Overrides:

remove in class AbstractContainerManager<XYSequenceContainer>

Parameters:

index - the index of the container to remove

Returns:

the container that got removed

indexOf

public int indexOf(String id)

Determines the index of the sequence with the specified ID.

Specified by:

indexOf in interface NamedContainerManager

Parameters:

id - the ID of the sequence

Returns:

the index of the sequence or -1 if not found

getVisibleIndices

public int[] getVisibleIndices()

Returns the indices of all visible containers.

Specified by:

getVisibleIndices in interface VisibilityContainerManager<XYSequenceContainer>

Returns:

all containers

getAllVisible

public List<XYSequenceContainer> getAllVisible()

Returns (a copy of) all currently stored containers. Those containers have no manager.

Specified by:

getAllVisible in interface VisibilityContainerManager<XYSequenceContainer>

Returns:

all containers

isVisible

public boolean isVisible(int index)

Returns whether the container at the specified position is visible.

Specified by:

isVisible in interface VisibilityContainerManager<XYSequenceContainer>

Parameters:

index - the container's position

Returns:

true if the container is visible

setVisible

public void setVisible(int index,
                       boolean visible)

Sets the specified container's visibility. Uses the scripting engine if the owner is derived from SpectrumPanel.

Specified by:

setVisible in interface VisibilityContainerManager<XYSequenceContainer>

Parameters:

index - the index of the container

visible - if true then the container will be made visible

getVisible

public XYSequenceContainer getVisible(int index)

Returns the nth visible container.

Specified by:

getVisible in interface VisibilityContainerManager<XYSequenceContainer>

Parameters:

index - the index (relates only to the visible containers!)

Returns:

the container, null if index out of range

countVisible

public int countVisible()

Returns the number of visible containers.

Specified by:

countVisible in interface VisibilityContainerManager<XYSequenceContainer>

Returns:

the number of visible containers

isMatch

protected boolean isMatch(XYSequenceContainer cont,
                          String search,
                          boolean regExp)

Returns whether the container matches the current search.

Specified by:

isMatch in class AbstractContainerManager<XYSequenceContainer>

Parameters:

cont - the container to check

search - the search string

regExp - whether to perform regular expression matching