java.lang.Object
- weka.filters.Filter
- - weka.filters.SimpleFilter
  - - weka.filters.SimpleStreamFilter
    - - weka.filters.unsupervised.attribute.SavitzkyGolay

All Implemented Interfaces:: Serializable, weka.core.CapabilitiesHandler, weka.core.CapabilitiesIgnorer, weka.core.CommandlineRunnable, weka.core.OptionHandler, weka.core.RevisionHandler, weka.core.TechnicalInformationHandler, weka.filters.StreamableFilter, weka.filters.UnsupervisedFilter

public class SavitzkyGolay
extends weka.filters.SimpleStreamFilter
implements weka.core.TechnicalInformationHandler, weka.filters.UnsupervisedFilter

A filter that applies Savitzky-Golay smoothing.
If a class attribute is present this will not be touched and moved to the end.

For more information see:

A. Savitzky, Marcel J.E. Golay (1964). Smoothing and Differentiation of Data by Simplified Least Squares Procedures. Analytical Chemistry. 36:1627-1639.

William H. Press, Saul A. Teukolsky, William T. Vetterling, Brian P. Flannery (1992). Savitzky-Golay Smoothing Filters.

BibTeX:

 @article{Savitzky1964,
    author = {A. Savitzky and Marcel J.E. Golay},
    journal = {Analytical Chemistry},
    pages = {1627-1639},
    title = {Smoothing and Differentiation of Data by Simplified Least Squares Procedures},
    volume = {36},
    year = {1964},
    HTTP = {http://dx.doi.org/10.1021/ac60214a047}
 }

 @inbook{Press1992,
    author = {William H. Press and Saul A. Teukolsky and William T. Vetterling and Brian P. Flannery},
    chapter = {14.8},
    edition = {Second},
    pages = {650-655},
    publisher = {Cambridge University Press},
    series = {Numerical Recipes in C},
    title = {Savitzky-Golay Smoothing Filters},
    year = {1992},
    PDF = {http://www.nrbook.com/a/bookcpdf/c14-8.pdf}
 }

Valid options are:

 -left <int>
  The number of points to the left (>= 0).
  (default: 3)

 -right <int>
  The number of points to the right (>= 0).
  (default: 3)

 -polynomial <int>
  The polynomial order (>= 2).
  (default: 2)

 -derivative <int>
  The order of the derivative (>= 0).
  (default: 1)

 -keep-attribute-names
  Whether to keep the original attribute names or use new ones ('att-XYZ').
  (default: don't keep)

Author:: fracpete (fracpete at waikato dot ac dot nz)
See Also:: Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`protected double[]`	`m_Coefficients`	the calculated coefficients.
`protected int`	`m_DerivativeOrder`	the order of the derivative.
`protected boolean`	`m_KeepAttributeNames`	whether to keep the original attribute names.
`protected int`	`m_NumPointsLeft`	the number of points to the left of a data point.
`protected int`	`m_NumPointsRight`	the number of points to the right of a data point.
`protected int`	`m_PolynomialOrder`	the polynomial order.

Fields inherited from class weka.filters.Filter
m_Debug, m_DoNotCheckCapabilities, m_FirstBatchDone, m_InputRelAtts, m_InputStringAtts, m_NewBatch, m_OutputRelAtts, m_OutputStringAtts

Constructor Summary

Constructors
Constructor Description

SavitzkyGolay()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`derivativeOrderTipText()`	Returns the tip text for this property.
`protected weka.core.Instances`	`determineOutputFormat(weka.core.Instances inputFormat)`	Determines the output format based on the input format and returns this.
`weka.core.Capabilities`	`getCapabilities()`	Returns the Capabilities of this filter.
`int`	`getDerivativeOrder()`	Returns the order of the derivative.
`boolean`	`getKeepAttributeNames()`	Returns whether to keep the original attribute names.
`int`	`getNumPointsLeft()`	Returns the number of points to the left of a data point.
`int`	`getNumPointsRight()`	Returns the number of points to the right of a data point.
`String[]`	`getOptions()`	Gets the current settings of the filter.
`int`	`getPolynomialOrder()`	Returns the polynominal order.
`String`	`getRevision()`	Returns the revision string.
`weka.core.TechnicalInformation`	`getTechnicalInformation()`	Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
`String`	`globalInfo()`	Returns a string describing this classifier.
`String`	`keepAttributeNamesTipText()`	Returns the tip text for this property.
`Enumeration`	`listOptions()`	Returns an enumeration describing the available options.
`static void`	`main(String[] args)`	Main method for testing this class.
`String`	`numPointsLeftTipText()`	Returns the tip text for this property.
`String`	`numPointsRightTipText()`	Returns the tip text for this property.
`String`	`polynomialOrderTipText()`	Returns the tip text for this property.
`protected weka.core.Instance`	`process(weka.core.Instance instance)`	processes the given instance (may change the provided instance) and returns the modified version.
`protected void`	`reset()`	Resets the filter.
`void`	`setDerivativeOrder(int value)`	Sets the order of the derivative.
`void`	`setKeepAttributeNames(boolean value)`	Sets whether to keep the original attribute names.
`void`	`setNumPointsLeft(int value)`	Sets the number of points to the left of a data point.
`void`	`setNumPointsRight(int value)`	Sets the number of points to the right of a data point.
`void`	`setOptions(String[] options)`	Parses a list of options for this object.
`void`	`setPolynomialOrder(int value)`	Sets the polynomial order.

Methods inherited from class weka.filters.SimpleStreamFilter
batchFinished, hasImmediateOutputFormat, input, preprocess, process

Methods inherited from class weka.filters.SimpleFilter
setInputFormat

Methods inherited from class weka.filters.Filter
batchFilterFile, bufferInput, copyValues, copyValues, debugTipText, doNotCheckCapabilitiesTipText, filterFile, flushInput, getCapabilities, getDebug, getDoNotCheckCapabilities, getInputFormat, getOutputFormat, initInputLocators, initOutputLocators, inputFormatPeek, isFirstBatchDone, isNewBatch, isOutputFormatDefined, makeCopies, makeCopy, mayRemoveInstanceAfterFirstBatchDone, numPendingOutput, output, outputFormatPeek, outputPeek, postExecution, preExecution, push, push, resetQueue, run, runFilter, setDebug, setDoNotCheckCapabilities, setOutputFormat, testInputFormat, toString, useFilter, wekaStaticWrapper

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - m_PolynomialOrder
```
protected int m_PolynomialOrder
```
    the polynomial order.
  - m_DerivativeOrder
```
protected int m_DerivativeOrder
```
    the order of the derivative.
  - m_NumPointsLeft
```
protected int m_NumPointsLeft
```
    the number of points to the left of a data point.
  - m_NumPointsRight
```
protected int m_NumPointsRight
```
    the number of points to the right of a data point.
  - m_KeepAttributeNames
```
protected boolean m_KeepAttributeNames
```
    whether to keep the original attribute names.
  - m_Coefficients
```
protected double[] m_Coefficients
```
    the calculated coefficients.
- Constructor Detail
  - SavitzkyGolay
```
public SavitzkyGolay()
```
- Method Detail
  - globalInfo
```
public String globalInfo()
```
    Returns a string describing this classifier.
    
    Specified by:
    
    globalInfo in class weka.filters.SimpleFilter
    
    Returns:
    
    a description of the classifier suitable for displaying in the explorer/experimenter gui
  - getTechnicalInformation
```
public weka.core.TechnicalInformation getTechnicalInformation()
```
    Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
    
    Specified by:
    
    getTechnicalInformation in interface weka.core.TechnicalInformationHandler
    
    Returns:
    
    the technical information about this class
  - listOptions
```
public Enumeration listOptions()
```
    Returns an enumeration describing the available options.
    
    Specified by:
    
    listOptions in interface weka.core.OptionHandler
    
    Overrides:
    
    listOptions in class weka.filters.Filter
    
    Returns:
    
    an enumeration of all the available options.
  - setOptions
```
public void setOptions(String[] options)
                throws Exception
```
    Parses a list of options for this object. Also resets the state of the filter (this reset doesn't affect the options).
    
    Specified by:
    
    setOptions in interface weka.core.OptionHandler
    
    Overrides:
    
    setOptions in class weka.filters.Filter
    
    Parameters:
    
    options - the list of options as an array of strings
    
    Throws:
    
    Exception - if an option is not supported
    
    See Also:
    
    reset()
  - getOptions
```
public String[] getOptions()
```
    Gets the current settings of the filter.
    
    Specified by:
    
    getOptions in interface weka.core.OptionHandler
    
    Overrides:
    
    getOptions in class weka.filters.Filter
    
    Returns:
    
    an array of strings suitable for passing to setOptions
  - reset
```
protected void reset()
```
    Resets the filter.
    
    Overrides:
    
    reset in class weka.filters.SimpleFilter
  - setPolynomialOrder
```
public void setPolynomialOrder(int value)
```
    Sets the polynomial order.
    
    Parameters:
    
    value - the order
  - getPolynomialOrder
```
public int getPolynomialOrder()
```
    Returns the polynominal order.
    
    Returns:
    
    the order
  - polynomialOrderTipText
```
public String polynomialOrderTipText()
```
    Returns the tip text for this property.
    
    Returns:
    
    tip text for this property suitable for displaying in the GUI or for listing the options.
  - setDerivativeOrder
```
public void setDerivativeOrder(int value)
```
    Sets the order of the derivative.
    
    Parameters:
    
    value - the order
  - getDerivativeOrder
```
public int getDerivativeOrder()
```
    Returns the order of the derivative.
    
    Returns:
    
    the order
  - derivativeOrderTipText
```
public String derivativeOrderTipText()
```
    Returns the tip text for this property.
    
    Returns:
    
    tip text for this property suitable for displaying in the GUI or for listing the options.
  - setNumPointsLeft
```
public void setNumPointsLeft(int value)
```
    Sets the number of points to the left of a data point.
    
    Parameters:
    
    value - the number of points
  - getNumPointsLeft
```
public int getNumPointsLeft()
```
    Returns the number of points to the left of a data point.
    
    Returns:
    
    the number of points
  - numPointsLeftTipText
```
public String numPointsLeftTipText()
```
    Returns the tip text for this property.
    
    Returns:
    
    tip text for this property suitable for displaying in the GUI or for listing the options.
  - setNumPointsRight
```
public void setNumPointsRight(int value)
```
    Sets the number of points to the right of a data point.
    
    Parameters:
    
    value - the number of points
  - getNumPointsRight
```
public int getNumPointsRight()
```
    Returns the number of points to the right of a data point.
    
    Returns:
    
    the number of points
  - numPointsRightTipText
```
public String numPointsRightTipText()
```
    Returns the tip text for this property.
    
    Returns:
    
    tip text for this property suitable for displaying in the GUI or for listing the options.
  - setKeepAttributeNames
```
public void setKeepAttributeNames(boolean value)
```
    Sets whether to keep the original attribute names.
    
    Parameters:
    
    value - true if to keep
  - getKeepAttributeNames
```
public boolean getKeepAttributeNames()
```
    Returns whether to keep the original attribute names.
    
    Returns:
    
    true if to keep
  - keepAttributeNamesTipText
```
public String keepAttributeNamesTipText()
```
    Returns the tip text for this property.
    
    Returns:
    
    tip text for this property suitable for displaying in the GUI or for listing the options.
  - getCapabilities
```
public weka.core.Capabilities getCapabilities()
```
    Returns the Capabilities of this filter. Derived filters have to override this method to enable capabilities.
    
    Specified by:
    
    getCapabilities in interface weka.core.CapabilitiesHandler
    
    Overrides:
    
    getCapabilities in class weka.filters.Filter
    
    Returns:
    
    the capabilities of this object
    
    See Also:
    
    Capabilities
  - determineOutputFormat
```
protected weka.core.Instances determineOutputFormat(weka.core.Instances inputFormat)
                                             throws Exception
```
    Determines the output format based on the input format and returns this. In case the output format cannot be returned immediately, i.e., hasImmediateOutputFormat() returns false, then this method will called from batchFinished() after the call of preprocess(Instances), in which, e.g., statistics for the actual processing step can be gathered.
    
    Specified by:
    
    determineOutputFormat in class weka.filters.SimpleStreamFilter
    
    Parameters:
    
    inputFormat - the input format to base the output format on
    
    Returns:
    
    the output format
    
    Throws:
    
    Exception - in case the determination goes wrong
  - process
```
protected weka.core.Instance process(weka.core.Instance instance)
                              throws Exception
```
    processes the given instance (may change the provided instance) and returns the modified version.
    
    Specified by:
    
    process in class weka.filters.SimpleStreamFilter
    
    Parameters:
    
    instance - the instance to process
    
    Returns:
    
    the modified data
    
    Throws:
    
    Exception - in case the processing goes wrong
  - getRevision
```
public String getRevision()
```
    Returns the revision string.
    
    Specified by:
    
    getRevision in interface weka.core.RevisionHandler
    
    Overrides:
    
    getRevision in class weka.filters.Filter
    
    Returns:
    
    the revision
  - main
```
public static void main(String[] args)
```
    Main method for testing this class.
    
    Parameters:
    
    args - should contain arguments to the filter: use -h for help

Class SavitzkyGolay

Field Summary

Fields inherited from class weka.filters.Filter

Constructor Summary

Method Summary

Methods inherited from class weka.filters.SimpleStreamFilter

Methods inherited from class weka.filters.SimpleFilter

Methods inherited from class weka.filters.Filter

Methods inherited from class java.lang.Object

Field Detail

m_PolynomialOrder

m_DerivativeOrder

m_NumPointsLeft

m_NumPointsRight

m_KeepAttributeNames

m_Coefficients

Constructor Detail

SavitzkyGolay

Method Detail

globalInfo

getTechnicalInformation

listOptions

setOptions

getOptions

reset

setPolynomialOrder

getPolynomialOrder

polynomialOrderTipText

setDerivativeOrder

getDerivativeOrder

derivativeOrderTipText

setNumPointsLeft

getNumPointsLeft

numPointsLeftTipText

setNumPointsRight

getNumPointsRight

numPointsRightTipText

setKeepAttributeNames

getKeepAttributeNames

keepAttributeNamesTipText

getCapabilities

determineOutputFormat

process

getRevision

main