Package adams.data.io.input

Class TrinamixSpectrumReader

java.lang.Object

adams.core.logging.LoggingObject

adams.core.logging.CustomLoggingLevelObject

adams.core.option.AbstractOptionHandler

adams.data.io.input.AbstractDataContainerReader<Spectrum>

adams.data.io.input.AbstractSpectrumReader

adams.data.io.input.TrinamixSpectrumReader

All Implemented Interfaces:

adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.io.FileFormatHandler, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.ShallowCopySupporter<adams.data.io.input.AbstractDataContainerReader>, adams.core.SizeOfHandler, adams.core.Stoppable, Serializable, Comparable

public class TrinamixSpectrumReader
extends AbstractSpectrumReader

Reader for the trinamiX (https://trinamixsensing.com/) CSV format.

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.data.io.input.AbstractSpectrumReader

m_Format, m_Instrument, m_KeepFormat, m_Stopped, m_UseAbsoluteSource, OPTION_OUTPUTDIR

Fields inherited from class adams.data.io.input.AbstractDataContainerReader

m_CreateDummyReport, m_Input, m_InputIsFile, m_Processed, m_ReadData

Fields inherited from class adams.core.option.AbstractOptionHandler

m_OptionManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
TrinamixSpectrumReader()

Method Summary

Modifier and Type	Method	Description
protected void	add(String instrument, String sampleID, String repeat, String timestamp, float[] waveno, float[] absorb)	Adds the spectrum.
String	getFormatDescription()	Returns a string describing the format (used in the file chooser).
String[]	getFormatExtensions()	Returns the extension(s) of the format.
String	globalInfo()	Returns a string describing the object.
protected void	readData()	Performs the actual reading.

Methods inherited from class adams.data.io.input.AbstractSpectrumReader

checkData, createDummyReport, defineOptions, formatTipText, getDefaultFormat, getDefaultInstrument, getDefaultKeepFormat, getDefaultUseAbsoluteSource, getFormat, getInstrument, getKeepFormat, getReaders, getUseAbsoluteSource, instrumentTipText, keepFormatTipText, postProcessData, runReader, setFormat, setInstrument, setKeepFormat, setUseAbsoluteSource, stopExecution, useAbsoluteSourceTipText

Methods inherited from class adams.data.io.input.AbstractDataContainerReader

cleanUp, compareTo, createDummyReportTipText, destroy, doRead, equals, getAdditionalInformation, getCreateDummyReport, getDefaultFormatExtension, getInput, initialize, inputTipText, isInputFile, read, reset, setCreateDummyReport, setInput, shallowCopy, shallowCopy

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, finishInit, getDefaultLoggingLevel, getOptionManager, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.logging.LoggingLevelHandler

getLoggingLevel

Constructor Detail

TrinamixSpectrumReader

public TrinamixSpectrumReader()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in interface adams.core.GlobalInfoSupporter

Specified by:

globalInfo in class adams.core.option.AbstractOptionHandler

Returns:

a description suitable for displaying in the gui

getFormatDescription

public String getFormatDescription()

Returns a string describing the format (used in the file chooser).

Specified by:

getFormatDescription in interface adams.core.io.FileFormatHandler

Specified by:

getFormatDescription in class adams.data.io.input.AbstractDataContainerReader<Spectrum>

Returns:

a description suitable for displaying in the file chooser

getFormatExtensions

public String[] getFormatExtensions()

Returns the extension(s) of the format.

Specified by:

getFormatExtensions in interface adams.core.io.FileFormatHandler

Specified by:

getFormatExtensions in class adams.data.io.input.AbstractDataContainerReader<Spectrum>

Returns:

the extension (without the dot!)

add

protected void add(String instrument,
                   String sampleID,
                   String repeat,
                   String timestamp,
                   float[] waveno,
                   float[] absorb)

Adds the spectrum.

Parameters:

instrument - the instrument

sampleID - the sample ID

repeat - the repeat

timestamp - the timestamp

waveno - the wave numbers

absorb - the absorbance amplitudes

readData

protected void readData()

Performs the actual reading.

Specified by:

readData in class adams.data.io.input.AbstractDataContainerReader<Spectrum>