| AbstractInPlaceSpectrumTransformer |
Ancestor for spectrum transformers that allow the processing to
happen in-place, rather than on a copy of the data.
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| BulkSampleDataDbWriter |
Writes sample data to the database and outputs whether the operation was successful.
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| BulkSpectrumDbWriter |
Writes spectra to the database and outputs whether the operation was successful.
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| Cleaner |
In case of Instances objects, 'unclean' Instance objects get removed.
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| Cleaner.CleanJob |
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| DeleteDbSampleDataValue |
Deletes the specified values from the sampledata table.
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| DeleteSampleDataValue |
Deletes values from sample data.
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| DeleteSampleDataValueByExpression |
| DeleteSpectrum |
Removes the spectrum identified by database ID or sample ID.
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| Evaluator |
If input is Instances, build this Evaluator.
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| Evaluator.EvaluateJob |
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| GetSampleDataValue |
Retrieves a value from sample data.
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| GetSpectrumAmplitude |
Retrieves the spectrum's amplitude either via its index or wave number.
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| InstanceGenerator |
Generates weka.core.Instance objects from spectra or reports/sample data.
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| InstanceToSpectrum |
Converts a weka.core.Instance to a Spectrum.
By default, the wave numbers start at 0 and use an increment of 1.
If 'first' and 'last' wave number are supplied, the step size is calculated based on the number of amplitudes present in the Instance.
If only 'first' wave number is supplied, then the supplied wave step size is used.
'first' and 'last' get ignored if a value of less than 0 is supplied.
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| MergeSampleDataFromMap |
Merges the passing through spectrum/sample data objects with the referenced map of sample data objects in storage (the map uses the sample ID as key).
See also:
adams.data.conversion.SampleDataArrayToMap
Input/output:
- accepts:
adams.data.spectrum.Spectrum
adams.data.sampledata.SampleData
- generates:
adams.data.spectrum.Spectrum
adams.data.sampledata.SampleData
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| MultiSpectrumAdd |
Adds a value obtained from either the callable actor or from storage.
Callable actor takes precedent over storage, i.e., only if the callable actor cannot be located, is the storage name used.
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| MultiSpectrumFilter |
Generates a single spectrum from a multi-spectrum using the specified filter.
For some filters that use several spectra, the order of the spectra is important.
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| MultiSpectrumOperation |
| MultiSpectrumOutlierDetector |
Uses the specified multi-spectrum filter to obtain a single spectrum from the multi-spectrum and applies the outlier detector to it.
Any resulting detections get added to the multi-spectrum itself.
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| MultiSpectrumRemove |
Removes all spectra from the multi-spectrum that match the criteria.
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| MultiSpectrumReportFilter |
Generates a single spectrum from a multi-spectrum using the specified filter.
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| PostProcessor |
Post-processes the input Instances or, after the post-processor has been initialized with Instances, also input Instance objects.
The actual post-processor in use gets output when container output enabled.
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| PredictionCheck |
Applies the specified check scheme to the incoming evaluation container.
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| SampleDataDbReader |
Loads sample data from the database and passes it on.
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| SampleDataDbWriter |
Writes sample data to the database if possible and passes the ID of the saved report on.
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| SampleDataFileReader |
Loads a file containing sample data from disk with a specified reader and passes it on.
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| SampleDataFileWriter |
Saves a quantitation report to disk with the specified writer and passes the absolute filename on.
As filename/directory name (depending on the writer) the database ID of the report is used (below the specified output directory).
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| SampleDataValueDbWriter |
Stores the specified values from the sample data passing through in the database.
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| SetEvaluationMetaData |
Adds the specified value under the listed key in the evaluation container.
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| SetSampleDataValue |
Sets a value in the sample data.
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| SetSpectrumAmplitude |
Sets the amplitude for the specified wave number.
Can either be used to replace an existing spectrum point or simply to insert another one.
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| SpectralAngleMapper |
Performs Spectral Angle Mapping on a set of spectra.
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| SpectrumAppend |
Appends the incoming spectrum to the one available from storage.
If none yet available from storage, then the current one simply put into storage.
If the spectrum already contains elements with the same wave number, then these will get replaced by the current ones.
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| SpectrumDbReader |
Loads a spectrum from the database and passes it on.
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| SpectrumDbWriter |
Writes a spectrum to the database and passes its ID on.
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| SpectrumDiff |
Computes the difference between two spectra (received as array) and outputs the difference as spectrum again: spectrum 1 - spectrum 2
Input/output:
- accepts:
knir.data.spectrum.Spectrum[]
- generates:
knir.data.spectrum.Spectrum
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| SpectrumFeatureGenerator |
Applies a spectrum feature generator to the incoming spectrum and outputs the generated features.
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| SpectrumFileReader |
Loads a file/directory containing spectrums from disk with a specified reader and passes them on.
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| SpectrumFileWriter |
Saves a spectrum to disk with the specified writer and passes the absolute filename on.
As filename/directory name (depending on the writer) the database ID of the spectrum is used (below the specified output directory).
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| SpectrumFilter |
Filters data using the specified filter.
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| SpectrumInfo |
Outputs statistics of a spectrum.
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| SpectrumMinMax |
Keeps track of min/max per wave number and outputs these min/max spectra at the specified interval of spectra processed.
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| SpreadSheetRowGenerator |
Generates spreadsheet row objects from spectra or reports/sample data.
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| ThreeWayDataFeatureGenerator |
Applies a 3-way data feature generator to the incoming data and outputs the generated features.
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| ThreeWayDataFileReader |
| ThreeWayDataFileWriter |
| ThreeWayDataFilter |
Filters data using the specified filter.
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| ThreeWayDataLoadingMatrix |
| ThreeWayDataMerge |
Merges the incoming 3-way data structures using the specified algorithm.
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| ThreeWayDataModelFilter |
| ThreeWayDataTrain |