Package adams.flow.transformer

Class DeleteDbSampleDataValue

  • All Implemented Interfaces:
    adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.QuickInfoSupporter, adams.core.ShallowCopySupporter<adams.flow.core.Actor>, adams.core.SizeOfHandler, adams.core.Stoppable, adams.core.StoppableWithFeedback, adams.core.VariablesInspectionHandler, adams.db.DatabaseConnectionUser, adams.event.VariableChangeListener, adams.flow.core.Actor, adams.flow.core.ErrorHandler, adams.flow.core.InputConsumer, adams.flow.core.OutputProducer, Serializable, Comparable
    public class DeleteDbSampleDataValue
extends adams.flow.transformer.AbstractDeleteDbReportValue<SampleData>
    Deletes the specified values from the sampledata table.

    Input/output:
    - accepts:
       adams.flow.core.Unknown
    - generates:
       adams.flow.core.Unknown


    -logging-level <OFF|SEVERE|WARNING|INFO|CONFIG|FINE|FINER|FINEST> (property: loggingLevel)
    The logging level for outputting errors and debugging output.
    default: WARNING
 
    -name <java.lang.String> (property: name)
    The name of the actor.
    default: DeleteDbSampleValue
 
    -annotation <adams.core.base.BaseAnnotation> (property: annotations)
    The annotations to attach to this actor.
    default:
 
    -skip <boolean> (property: skip)
    If set to true, transformation is skipped and the input token is just forwarded
    as it is.
    default: false
 
    -stop-flow-on-error <boolean> (property: stopFlowOnError)
    If set to true, the flow execution at this level gets stopped in case this
    actor encounters an error; the error gets propagated; useful for critical
    actors.
    default: false
 
    -silent <boolean> (property: silent)
    If enabled, then no errors are output in the console; Note: the enclosing
    actor handler must have this enabled as well.
    default: false
 
    -sample-id <java.lang.String> (property: sampleID)
    The sample ID of the report to remove fields from.
    default:
 
    -field <adams.data.report.Field> [-field ...] (property: fields)
    The fields to remove from the sampledata table.
    default:
    Author:
    FracPete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      • Fields inherited from class adams.flow.transformer.AbstractDeleteDbReportValue

        m_Fields, m_SampleID

      • Fields inherited from class adams.flow.transformer.AbstractDbTransformer

        m_DatabaseConnection

      • Fields inherited from class adams.flow.transformer.AbstractTransformer

        BACKUP_INPUT, BACKUP_OUTPUT, m_InputToken, m_OutputToken

      • Fields inherited from class adams.flow.core.AbstractActor

        m_Annotations, m_BackupState, m_DetectedObjectVariables, m_DetectedVariables, m_ErrorHandler, m_Executed, m_Executing, m_ExecutionListeningSupporter, m_FullName, m_LoggingPrefix, m_Name, m_Parent, m_ScopeHandler, m_Self, m_Silent, m_Skip, m_StopFlowOnError, m_StopMessage, m_Stopped, m_StorageHandler, m_VariablesUpdated

      • Fields inherited from class adams.core.option.AbstractOptionHandler

        m_OptionManager

      • Fields inherited from class adams.core.logging.LoggingObject

        m_Logger, m_LoggingIsEnabled, m_LoggingLevel

      • Fields inherited from interface adams.flow.core.Actor

        FILE_EXTENSION, FILE_EXTENSION_GZ

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      String fieldsTipText()
      Returns the tip text for this property.
      protected adams.db.AbstractDatabaseConnection getDatabaseConnection()
      Determines the database connection in the flow.
      protected adams.db.AbstractDatabaseConnection getDefaultDatabaseConnection()
      Returns the default database connection.
      protected adams.data.report.AbstractField[] getDefaultFields()
      Returns the default fields for the option.
      adams.data.report.Field[] getFields()
      Returns the fields to delete from the report.
      protected adams.db.ReportProviderByID<SampleData> getReportProvider()
      Returns the report provider to use for removing the
      String globalInfo()
      Returns a string describing the object.
      void setFields​(adams.data.report.Field[] value)
      Sets the fields to delete from the report.

      • Methods inherited from class adams.flow.transformer.AbstractDeleteDbReportValue

        accepts, defineOptions, generates, getQuickInfo, getSampleID, queryDatabase, sampleIDTipText, setSampleID

      • Methods inherited from class adams.flow.transformer.AbstractDbTransformer

        doExecute, initialize, setUpDatabaseConnection, wrapUp

      • Methods inherited from class adams.flow.transformer.AbstractTransformer

        backupState, currentInput, execute, hasInput, hasPendingOutput, input, output, postExecute, restoreState

      • Methods inherited from class adams.flow.core.AbstractActor

        annotationsTipText, canInspectOptions, canPerformSetUpCheck, cleanUp, compareTo, configureLogger, destroy, equals, finalUpdateVariables, findVariables, findVariables, forceVariables, forCommandLine, forName, forName, getAdditionalInformation, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowActors, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, handleException, hasErrorHandler, hasStopMessage, index, isBackedUp, isExecuted, isExecuting, isFinished, isHeadless, isStopped, nameTipText, performSetUpChecks, performVariableChecks, preExecute, pruneBackup, pruneBackup, reset, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, silentTipText, sizeOf, skipTipText, stopExecution, stopExecution, stopFlowOnErrorTipText, updateDetectedVariables, updatePrefix, updateVariables, variableChanged

      • Methods inherited from class adams.core.option.AbstractOptionHandler

        cleanUpOptions, finishInit, getDefaultLoggingLevel, getOptionManager, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString

      • Methods inherited from class adams.core.logging.LoggingObject

        getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled

      • Methods inherited from interface adams.flow.core.Actor

        cleanUp, compareTo, destroy, equals, findVariables, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, hasErrorHandler, hasStopMessage, index, isExecuted, isFinished, isHeadless, isStopped, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, sizeOf, stopExecution, stopExecution, toCommandLine, variableChanged

      • Methods inherited from interface adams.core.AdditionalInformationHandler

        getAdditionalInformation

      • Methods inherited from interface adams.core.logging.LoggingLevelHandler

        getLoggingLevel, setLoggingLevel

      • Methods inherited from interface adams.core.logging.LoggingSupporter

        getLogger, isLoggingEnabled

      • Methods inherited from interface adams.core.option.OptionHandler

        cleanUpOptions, getOptionManager

      • Methods inherited from interface adams.core.VariablesInspectionHandler

        canInspectOptions

    • Constructor Detail

      • DeleteDbSampleDataValue

        public DeleteDbSampleDataValue()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing the object.
        Specified by:
        globalInfo in interface adams.core.GlobalInfoSupporter
        Specified by:
        globalInfo in class adams.flow.transformer.AbstractDeleteDbReportValue<SampleData>
        Returns:
        a description suitable for displaying in the gui

      • getDefaultFields

        protected adams.data.report.AbstractField[] getDefaultFields()
        Returns the default fields for the option.
        Specified by:
        getDefaultFields in class adams.flow.transformer.AbstractDeleteDbReportValue<SampleData>
        Returns:
        the default fields

      • setFields

        public void setFields​(adams.data.report.Field[] value)
        Sets the fields to delete from the report.
        Parameters:
        value - the fields

      • getFields

        public adams.data.report.Field[] getFields()
        Returns the fields to delete from the report.
        Returns:
        the fields

      • fieldsTipText

        public String fieldsTipText()
        Returns the tip text for this property.
        Specified by:
        fieldsTipText in class adams.flow.transformer.AbstractDeleteDbReportValue<SampleData>
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • getReportProvider

        protected adams.db.ReportProviderByID<SampleData> getReportProvider()
        Returns the report provider to use for removing the
        Specified by:
        getReportProvider in class adams.flow.transformer.AbstractDeleteDbReportValue<SampleData>
        Returns:
        the provider

      • getDefaultDatabaseConnection

        protected adams.db.AbstractDatabaseConnection getDefaultDatabaseConnection()
        Returns the default database connection.
        Specified by:
        getDefaultDatabaseConnection in class adams.flow.transformer.AbstractDbTransformer
        Returns:
        the default database connection

      • getDatabaseConnection

        protected adams.db.AbstractDatabaseConnection getDatabaseConnection()
        Determines the database connection in the flow.
        Specified by:
        getDatabaseConnection in class adams.flow.transformer.AbstractDbTransformer
        Returns:
        the database connection to use