java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - adams.gui.core.BasePanel
        
        adams.gui.core.UndoPanel
        
        adams.gui.visualization.spectrum.SpectrumExplorer

All Implemented Interfaces:

adams.core.CleanUpHandler, adams.core.StatusMessageHandler, adams.db.DatabaseConnectionHandler, adams.db.DatabaseConnectionProvider, adams.db.DatabaseConnectionUser, adams.event.DatabaseConnectionChangeListener, adams.gui.core.MenuBarProvider, adams.gui.core.UndoHandler, adams.gui.core.UndoHandlerWithQuickAccess, adams.gui.event.DataChangeListener, adams.gui.event.FilterListener<Spectrum>, adams.gui.event.UndoListener, adams.gui.scripting.ScriptingEngineHandler, adams.gui.sendto.SendToActionSupporter, adams.gui.visualization.container.ContainerListManager<SpectrumContainerManager>, ImageObserver, MenuContainer, Serializable, EventListener, Accessible
```
public class SpectrumExplorer
extends adams.gui.core.UndoPanel
implements adams.gui.core.MenuBarProvider, adams.core.StatusMessageHandler, adams.gui.visualization.container.ContainerListManager<SpectrumContainerManager>, adams.event.DatabaseConnectionChangeListener, adams.db.DatabaseConnectionHandler, adams.gui.event.DataChangeListener, adams.gui.scripting.ScriptingEngineHandler, adams.core.CleanUpHandler, adams.gui.event.FilterListener<Spectrum>, adams.gui.sendto.SendToActionSupporter, adams.gui.core.UndoHandlerWithQuickAccess
```
A panel for exploring Spectrums, manipulating them with filters, etc.

Author:

fracpete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class javax.swing.JPanel
  JPanel.AccessibleJPanel
- Nested classes/interfaces inherited from class javax.swing.JComponent
  JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field	Description
`protected adams.data.filter.Filter<Spectrum>`	`m_CurrentFilter`	the current filter.
`protected FastICA`	`m_CurrentICA`	the current ICA analysis.
`protected PCA`	`m_CurrentPCA`	the current PCA analysis.
`protected PLS`	`m_CurrentPLS`	the current PLS analysis.
`protected adams.db.AbstractDatabaseConnection`	`m_DatabaseConnection`	the database connection.
`protected adams.gui.goe.GenericObjectEditorDialog`	`m_DialogColorProvider`	the dialog for selecting the color provider.
`protected adams.gui.visualization.container.FilterDialog`	`m_DialogFilter`	the filter dialog.
`protected adams.gui.goe.GenericObjectEditorDialog`	`m_DialogICA`	the ICA dialog.
`protected adams.gui.goe.GenericObjectEditorDialog`	`m_DialogPaintlet`	the dialog for selecting the paintlet.
`protected adams.gui.goe.GenericObjectEditorDialog`	`m_DialogPCA`	the PCA dialog.
`protected adams.gui.goe.GenericObjectEditorDialog`	`m_DialogPLS`	the PLS dialog.
`protected boolean`	`m_FilterOverlayOriginalData`	indicates whether the filtered data was overlayed over the original.
`protected SelectSpectrumDialog`	`m_LoadDialog`	the dialog for loading data.
`protected JMenuBar`	`m_MenuBar`	the menu bar, if used.
`protected JMenuItem`	`m_MenuItemClearData`	the clear data menu item.
`protected JCheckBoxMenuItem`	`m_MenuItemEnableUndo`	the toggle undo menu item.
`protected JMenuItem`	`m_MenuItemOverlayFlowOutput`	the overlay flow output menu item.
`protected JMenuItem`	`m_MenuItemProcessFilter`	the filter menu item.
`protected JMenuItem`	`m_MenuItemProcessICA`	the ica menu item.
`protected JMenuItem`	`m_MenuItemProcessPCA`	the pca menu item.
`protected JMenuItem`	`m_MenuItemProcessPLS`	the pls menu item.
`protected JMenuItem`	`m_MenuItemRedo`	the redo menu item.
`protected JMenuItem`	`m_MenuItemRefreshScripts`	the refresh scripts menu item.
`protected JMenuItem`	`m_MenuItemStartRecording`	the start recording menu item.
`protected JMenuItem`	`m_MenuItemStopExecution`	the stop execution menu item.
`protected JMenuItem`	`m_MenuItemStopRecording`	the stop recording menu item.
`protected JMenuItem`	`m_MenuItemUndo`	the undo menu item.
`protected JMenuItem`	`m_MenuItemViewAntiAliasing`	the toggle anti-aliasing menu item.
`protected JMenuItem`	`m_MenuItemViewColorProvider`	the color provider menu item.
`protected JMenuItem`	`m_MenuItemViewPaintlet`	the paintlet menu item.
`protected JMenuItem`	`m_MenuItemViewSelectedWaveNumber`	the toggle selected GC point menu item.
`protected JMenuItem`	`m_MenuItemViewZoomOverview`	the toggle zoom overview menu item.
`protected JMenuItem`	`m_MenuItemWindowDuplicate`	the menuitem for duplicating theew window.
`protected JMenuItem`	`m_MenuItemWindowNew`	the menuitem for creating a new window.
`protected JMenu`	`m_MenuScripts`	the menu item for scripts.
`protected JMenu`	`m_MenuView`	the menu item for view related stuff.
`protected JMenu`	`m_MenuWindow`	the menu item for window related stuff.
`protected SpectrumPanel`	`m_PanelSpectrum`	the panel for displaying.
`protected adams.gui.core.RecentFilesHandlerWithCommandline<JMenu>`	`m_RecentFilesHandler`	the recent files handler.
`protected SampleDataFactory.Panel`	`m_Reports`	the sample data reports.
`protected adams.gui.scripting.ScriptingDialog`	`m_ScriptingDialog`	the dialog for managing scripts.
`protected adams.gui.core.SearchPanel`	`m_SearchPanel`	for searching the fields in the reports.
`protected SpectrumFileChooser`	`m_SpectrumFileChooser`	the file chooser for importing data.
`protected adams.gui.core.BaseStatusBar`	`m_StatusBar`	the status bar.
`protected adams.gui.core.BaseTabbedPane`	`m_TabbedPane`	the tabbed pane for the data to display.
`static String`	`SESSION_FILE`	the file to store the recent files in.

Fields inherited from class adams.gui.core.UndoPanel
m_Undo

Fields inherited from class adams.gui.core.BasePanel
m_FileChooser

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor Description

SpectrumExplorer()
default constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addUndoPoint(String comment)`	Adds an undo point with the given comment.
`void`	`cleanUp()`	Cleans up data structures, frees up memory.
`void`	`clearData()`	Removes all the data.
`void`	`close()`	closes the dialog/frame.
`void`	`databaseConnectionStateChanged(adams.event.DatabaseConnectionChangeEvent e)`	A change in the database connection occurred.
`void`	`dataChanged(adams.gui.event.DataChangeEvent e)`	Gets called if the data of the spectrum panel has changed.
`protected SpectrumExplorer`	`duplicateWindow(boolean visible)`	Opens a new window with the same content/setup.
`void`	`filter()`	pops up GOE dialog for filter.
`void`	`filter(adams.gui.event.FilterEvent<Spectrum> e)`	Filters the data.
`SpectrumContainerManager`	`getContainerManager()`	Returns the current container manager.
`adams.db.AbstractDatabaseConnection`	`getDatabaseConnection()`	Returns the currently used database connection object, can be null.
`JMenuBar`	`getMenuBar()`	Creates a menu bar (singleton per panel object).
`adams.gui.scripting.AbstractScriptingEngine`	`getScriptingEngine()`	Returns the current scripting engine, can be null.
`Class[]`	`getSendToClasses()`	Returns the classes that the supporter generates.
`Object`	`getSendToItem(Class[] cls)`	Returns the object to send.
`SpectrumPanel`	`getSpectrumPanel()`	Returns the panel for painting the spectra.
`boolean`	`hasSendToItem(Class[] cls)`	Checks whether something to send is available.
`void`	`ica()`	Performs ICA on the visible spectra.
`protected void`	`initGUI()`	Initializes the widgets.
`protected void`	`initialize()`	Initializes the members.
`boolean`	`isZoomOverviewPanelVisible()`	Returns whether the zoom overview panel is visible or not.
`void`	`loadData()`	pops up the dialog for loading the data from a database.
`void`	`loadDataFromDisk()`	pops up file chooser dialog for spectrum readers.
`void`	`manageScripts()`	Executes a script.
`protected SpectrumExplorer`	`newWindow(boolean visible)`	Opens a new window.
`void`	`pca()`	Performs PCA on the visible spectra.
`void`	`pls()`	Performs PLS on the visible spectra.
`void`	`redo()`	performs a redo if possible.
`void`	`refreshScripts()`	re-builds the "Scripts" menu.
`protected void`	`selectColorProvider()`	Lets the user select a new color provider.
`protected void`	`selectPaintlet()`	Lets the user select a new paintlet.
`void`	`setContainerManager(SpectrumContainerManager value)`	Sets the manager for handling the containers.
`void`	`setDatabaseConnection(adams.db.AbstractDatabaseConnection value)`	Sets the database connection object to use.
`void`	`setZoomOverviewPanelVisible(boolean value)`	Sets the zoom overview panel visible or not.
`void`	`showStatus(String msg)`	Displays a message.
`void`	`startRecording()`	Starts the recording of commands.
`void`	`stopRecording()`	Stops the recording of commands.
`void`	`undo()`	performs an undo if possible.
`void`	`undoOccurred(adams.gui.event.UndoEvent e)`	An undo event occurred.
`protected void`	`updateMenu()`	updates the enabled state of the menu items.

Methods inherited from class adams.gui.core.UndoPanel
getUndo, isUndoSupported, setUndo

Methods inherited from class adams.gui.core.BasePanel
afterHide, afterShow, beforeHide, beforeShow, closeParent, finishInit, getParentChild, getParentDialog, getParentFrame, getParentInternalFrame, getParentTitle, initFileChooser, main, printErrorMessage, printException, saveComponent, setEnabledCascade, setEnabledCascade, setParentTitle, setVisible

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.gui.core.UndoHandler
getUndo, isUndoSupported, setUndo

- Field Detail
  - SESSION_FILE
```
public static final String SESSION_FILE
```
    the file to store the recent files in.
    
    See Also:
    
    Constant Field Values
  - m_PanelSpectrum
```
protected SpectrumPanel m_PanelSpectrum
```
    the panel for displaying.
  - m_StatusBar
```
protected adams.gui.core.BaseStatusBar m_StatusBar
```
    the status bar.
  - m_MenuBar
```
protected JMenuBar m_MenuBar
```
    the menu bar, if used.
  - m_MenuItemClearData
```
protected JMenuItem m_MenuItemClearData
```
    the clear data menu item.
  - m_MenuItemEnableUndo
```
protected JCheckBoxMenuItem m_MenuItemEnableUndo
```
    the toggle undo menu item.
  - m_MenuItemUndo
```
protected JMenuItem m_MenuItemUndo
```
    the undo menu item.
  - m_MenuItemRedo
```
protected JMenuItem m_MenuItemRedo
```
    the redo menu item.
  - m_MenuItemProcessFilter
```
protected JMenuItem m_MenuItemProcessFilter
```
    the filter menu item.
  - m_MenuItemProcessICA
```
protected JMenuItem m_MenuItemProcessICA
```
    the ica menu item.
  - m_MenuItemProcessPCA
```
protected JMenuItem m_MenuItemProcessPCA
```
    the pca menu item.
  - m_MenuItemProcessPLS
```
protected JMenuItem m_MenuItemProcessPLS
```
    the pls menu item.
  - m_MenuScripts
```
protected JMenu m_MenuScripts
```
    the menu item for scripts.
  - m_MenuItemStopExecution
```
protected JMenuItem m_MenuItemStopExecution
```
    the stop execution menu item.
  - m_MenuItemStartRecording
```
protected JMenuItem m_MenuItemStartRecording
```
    the start recording menu item.
  - m_MenuItemStopRecording
```
protected JMenuItem m_MenuItemStopRecording
```
    the stop recording menu item.
  - m_MenuItemOverlayFlowOutput
```
protected JMenuItem m_MenuItemOverlayFlowOutput
```
    the overlay flow output menu item.
  - m_MenuItemRefreshScripts
```
protected JMenuItem m_MenuItemRefreshScripts
```
    the refresh scripts menu item.
  - m_MenuView
```
protected JMenu m_MenuView
```
    the menu item for view related stuff.
  - m_MenuItemViewSelectedWaveNumber
```
protected JMenuItem m_MenuItemViewSelectedWaveNumber
```
    the toggle selected GC point menu item.
  - m_MenuItemViewZoomOverview
```
protected JMenuItem m_MenuItemViewZoomOverview
```
    the toggle zoom overview menu item.
  - m_MenuItemViewAntiAliasing
```
protected JMenuItem m_MenuItemViewAntiAliasing
```
    the toggle anti-aliasing menu item.
  - m_MenuItemViewColorProvider
```
protected JMenuItem m_MenuItemViewColorProvider
```
    the color provider menu item.
  - m_MenuItemViewPaintlet
```
protected JMenuItem m_MenuItemViewPaintlet
```
    the paintlet menu item.
  - m_MenuWindow
```
protected JMenu m_MenuWindow
```
    the menu item for window related stuff.
  - m_MenuItemWindowNew
```
protected JMenuItem m_MenuItemWindowNew
```
    the menuitem for creating a new window.
  - m_MenuItemWindowDuplicate
```
protected JMenuItem m_MenuItemWindowDuplicate
```
    the menuitem for duplicating theew window.
  - m_CurrentFilter
```
protected adams.data.filter.Filter<Spectrum> m_CurrentFilter
```
    the current filter.
  - m_CurrentPCA
```
protected PCA m_CurrentPCA
```
    the current PCA analysis.
  - m_CurrentICA
```
protected FastICA m_CurrentICA
```
    the current ICA analysis.
  - m_CurrentPLS
```
protected PLS m_CurrentPLS
```
    the current PLS analysis.
  - m_FilterOverlayOriginalData
```
protected boolean m_FilterOverlayOriginalData
```
    indicates whether the filtered data was overlayed over the original.
  - m_DialogFilter
```
protected adams.gui.visualization.container.FilterDialog m_DialogFilter
```
    the filter dialog.
  - m_DialogPCA
```
protected adams.gui.goe.GenericObjectEditorDialog m_DialogPCA
```
    the PCA dialog.
  - m_DialogICA
```
protected adams.gui.goe.GenericObjectEditorDialog m_DialogICA
```
    the ICA dialog.
  - m_DialogPLS
```
protected adams.gui.goe.GenericObjectEditorDialog m_DialogPLS
```
    the PLS dialog.
  - m_LoadDialog
```
protected SelectSpectrumDialog m_LoadDialog
```
    the dialog for loading data.
  - m_SpectrumFileChooser
```
protected SpectrumFileChooser m_SpectrumFileChooser
```
    the file chooser for importing data.
  - m_ScriptingDialog
```
protected adams.gui.scripting.ScriptingDialog m_ScriptingDialog
```
    the dialog for managing scripts.
  - m_TabbedPane
```
protected adams.gui.core.BaseTabbedPane m_TabbedPane
```
    the tabbed pane for the data to display.
  - m_Reports
```
protected SampleDataFactory.Panel m_Reports
```
    the sample data reports.
  - m_SearchPanel
```
protected adams.gui.core.SearchPanel m_SearchPanel
```
    for searching the fields in the reports.
  - m_DatabaseConnection
```
protected adams.db.AbstractDatabaseConnection m_DatabaseConnection
```
    the database connection.
  - m_DialogColorProvider
```
protected adams.gui.goe.GenericObjectEditorDialog m_DialogColorProvider
```
    the dialog for selecting the color provider.
  - m_DialogPaintlet
```
protected adams.gui.goe.GenericObjectEditorDialog m_DialogPaintlet
```
    the dialog for selecting the paintlet.
  - m_RecentFilesHandler
```
protected adams.gui.core.RecentFilesHandlerWithCommandline<JMenu> m_RecentFilesHandler
```
    the recent files handler.
- Constructor Detail
  - SpectrumExplorer
```
public SpectrumExplorer()
```
    default constructor.
- Method Detail
  - initialize
```
protected void initialize()
```
    Initializes the members.
    
    Overrides:
    
    initialize in class adams.gui.core.UndoPanel
  - initGUI
```
protected void initGUI()
```
    Initializes the widgets.
    
    Overrides:
    
    initGUI in class adams.gui.core.BasePanel
  - getSpectrumPanel
```
public SpectrumPanel getSpectrumPanel()
```
    Returns the panel for painting the spectra.
    
    Returns:
    
    the panel
  - showStatus
```
public void showStatus(String msg)
```
    Displays a message.
    
    Specified by:
    
    showStatus in interface adams.core.StatusMessageHandler
    
    Parameters:
    
    msg - the message to display
  - dataChanged
```
public void dataChanged(adams.gui.event.DataChangeEvent e)
```
    Gets called if the data of the spectrum panel has changed.
    
    Specified by:
    
    dataChanged in interface adams.gui.event.DataChangeListener
    
    Parameters:
    
    e - the event that the spectrum panel sent
  - getScriptingEngine
```
public adams.gui.scripting.AbstractScriptingEngine getScriptingEngine()
```
    Returns the current scripting engine, can be null.
    
    Specified by:
    
    getScriptingEngine in interface adams.gui.scripting.ScriptingEngineHandler
    
    Returns:
    
    the current engine
  - databaseConnectionStateChanged
```
public void databaseConnectionStateChanged(adams.event.DatabaseConnectionChangeEvent e)
```
    A change in the database connection occurred. Clears the undo cache.
    
    Specified by:
    
    databaseConnectionStateChanged in interface adams.event.DatabaseConnectionChangeListener
    
    Parameters:
    
    e - the event
  - undoOccurred
```
public void undoOccurred(adams.gui.event.UndoEvent e)
```
    An undo event occurred.
    
    Specified by:
    
    undoOccurred in interface adams.gui.event.UndoListener
    
    Parameters:
    
    e - the event
  - getContainerManager
```
public SpectrumContainerManager getContainerManager()
```
    Returns the current container manager.
    
    Specified by:
    
    getContainerManager in interface adams.gui.visualization.container.ContainerListManager<SpectrumContainerManager>
    
    Returns:
    
    the manager
  - setContainerManager
```
public void setContainerManager(SpectrumContainerManager value)
```
    Sets the manager for handling the containers.
    
    Specified by:
    
    setContainerManager in interface adams.gui.visualization.container.ContainerListManager<SpectrumContainerManager>
    
    Parameters:
    
    value - the manager
  - updateMenu
```
protected void updateMenu()
```
    updates the enabled state of the menu items.
  - refreshScripts
```
public void refreshScripts()
```
    re-builds the "Scripts" menu.
  - manageScripts
```
public void manageScripts()
```
    Executes a script.
  - startRecording
```
public void startRecording()
```
    Starts the recording of commands.
  - stopRecording
```
public void stopRecording()
```
    Stops the recording of commands.
  - getMenuBar
```
public JMenuBar getMenuBar()
```
    Creates a menu bar (singleton per panel object). Can be used in frames.
    
    Specified by:
    
    getMenuBar in interface adams.gui.core.MenuBarProvider
    
    Returns:
    
    the menu bar
  - clearData
```
public void clearData()
```
    Removes all the data.
  - loadData
```
public void loadData()
```
    pops up the dialog for loading the data from a database.
  - loadDataFromDisk
```
public void loadDataFromDisk()
```
    pops up file chooser dialog for spectrum readers.
  - close
```
public void close()
```
    closes the dialog/frame.
  - undo
```
public void undo()
```
    performs an undo if possible.
    
    Specified by:
    
    undo in interface adams.gui.core.UndoHandlerWithQuickAccess
  - redo
```
public void redo()
```
    performs a redo if possible.
    
    Specified by:
    
    redo in interface adams.gui.core.UndoHandlerWithQuickAccess
  - addUndoPoint
```
public void addUndoPoint(String comment)
```
    Adds an undo point with the given comment.
    
    Specified by:
    
    addUndoPoint in interface adams.gui.core.UndoHandlerWithQuickAccess
    
    Parameters:
    
    comment - the comment for the undo point
  - filter
```
public void filter()
```
    pops up GOE dialog for filter.
  - filter
```
public void filter(adams.gui.event.FilterEvent<Spectrum> e)
```
    Filters the data.
    
    Specified by:
    
    filter in interface adams.gui.event.FilterListener<Spectrum>
    
    Parameters:
    
    e - the event
  - ica
```
public void ica()
```
    Performs ICA on the visible spectra.
  - pca
```
public void pca()
```
    Performs PCA on the visible spectra.
  - pls
```
public void pls()
```
    Performs PLS on the visible spectra.
  - setZoomOverviewPanelVisible
```
public void setZoomOverviewPanelVisible(boolean value)
```
    Sets the zoom overview panel visible or not.
    
    Parameters:
    
    value - if true then the panel is visible
  - isZoomOverviewPanelVisible
```
public boolean isZoomOverviewPanelVisible()
```
    Returns whether the zoom overview panel is visible or not.
    
    Returns:
    
    true if visible
  - selectColorProvider
```
protected void selectColorProvider()
```
    Lets the user select a new color provider.
  - selectPaintlet
```
protected void selectPaintlet()
```
    Lets the user select a new paintlet.
  - getDatabaseConnection
```
public adams.db.AbstractDatabaseConnection getDatabaseConnection()
```
    Returns the currently used database connection object, can be null.
    
    Specified by:
    
    getDatabaseConnection in interface adams.db.DatabaseConnectionProvider
    
    Returns:
    
    the current object
  - setDatabaseConnection
```
public void setDatabaseConnection(adams.db.AbstractDatabaseConnection value)
```
    Sets the database connection object to use.
    
    Specified by:
    
    setDatabaseConnection in interface adams.db.DatabaseConnectionHandler
    
    Parameters:
    
    value - the object to use
  - getSendToClasses
```
public Class[] getSendToClasses()
```
    Returns the classes that the supporter generates.
    
    Specified by:
    
    getSendToClasses in interface adams.gui.sendto.SendToActionSupporter
    
    Returns:
    
    the classes
  - hasSendToItem
```
public boolean hasSendToItem(Class[] cls)
```
    Checks whether something to send is available.
    
    Specified by:
    
    hasSendToItem in interface adams.gui.sendto.SendToActionSupporter
    
    Parameters:
    
    cls - the classes to retrieve an item for
    
    Returns:
    
    true if an object is available for sending
  - getSendToItem
```
public Object getSendToItem(Class[] cls)
```
    Returns the object to send.
    
    Specified by:
    
    getSendToItem in interface adams.gui.sendto.SendToActionSupporter
    
    Parameters:
    
    cls - the classes to retrieve the item for
    
    Returns:
    
    the item to send
  - newWindow
```
protected SpectrumExplorer newWindow(boolean visible)
```
    Opens a new window.
    
    Parameters:
    
    visible - whether to make the window visible
  - duplicateWindow
```
protected SpectrumExplorer duplicateWindow(boolean visible)
```
    Opens a new window with the same content/setup.
    
    Parameters:
    
    visible - whether to make the window visible
  - cleanUp
```
public void cleanUp()
```
    Cleans up data structures, frees up memory.
    
    Specified by:
    
    cleanUp in interface adams.core.CleanUpHandler

Class SpectrumExplorer

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class adams.gui.core.UndoPanel

Fields inherited from class adams.gui.core.BasePanel

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class adams.gui.core.UndoPanel

Methods inherited from class adams.gui.core.BasePanel

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface adams.gui.core.UndoHandler

Field Detail

SESSION_FILE

m_PanelSpectrum

m_StatusBar

m_MenuBar

m_MenuItemClearData

m_MenuItemEnableUndo

m_MenuItemUndo

m_MenuItemRedo

m_MenuItemProcessFilter

m_MenuItemProcessICA

m_MenuItemProcessPCA

m_MenuItemProcessPLS

m_MenuScripts

m_MenuItemStopExecution

m_MenuItemStartRecording

m_MenuItemStopRecording

m_MenuItemOverlayFlowOutput

m_MenuItemRefreshScripts

m_MenuView

m_MenuItemViewSelectedWaveNumber

m_MenuItemViewZoomOverview

m_MenuItemViewAntiAliasing

m_MenuItemViewColorProvider

m_MenuItemViewPaintlet

m_MenuWindow

m_MenuItemWindowNew

m_MenuItemWindowDuplicate

m_CurrentFilter

m_CurrentPCA

m_CurrentICA

m_CurrentPLS

m_FilterOverlayOriginalData

m_DialogFilter

m_DialogPCA

m_DialogICA

m_DialogPLS

m_LoadDialog

m_SpectrumFileChooser

m_ScriptingDialog

m_TabbedPane

m_Reports

m_SearchPanel

m_DatabaseConnection

m_DialogColorProvider

m_DialogPaintlet

m_RecentFilesHandler

Constructor Detail

SpectrumExplorer

Method Detail

initialize

initGUI

getSpectrumPanel

showStatus

dataChanged

getScriptingEngine

databaseConnectionStateChanged

undoOccurred