Package adams.flow.transformer

Class HeatmapFeatureGenerator

  • All Implemented Interfaces:
    adams.core.AdditionalInformationHandler, adams.core.CleanUpHandler, adams.core.Destroyable, adams.core.GlobalInfoSupporter, adams.core.logging.LoggingLevelHandler, adams.core.logging.LoggingSupporter, adams.core.option.OptionHandler, adams.core.QuickInfoSupporter, adams.core.ShallowCopySupporter<adams.flow.core.Actor>, adams.core.SizeOfHandler, adams.core.Stoppable, adams.core.StoppableWithFeedback, adams.core.VariablesInspectionHandler, adams.event.VariableChangeListener, adams.flow.core.Actor, adams.flow.core.ErrorHandler, adams.flow.core.InputConsumer, adams.flow.core.OutputProducer, adams.flow.core.VariableMonitor, adams.flow.transformer.FeatureGenerator<AbstractHeatmapFeatureGenerator>, Serializable, Comparable
    public class HeatmapFeatureGenerator
extends adams.flow.transformer.AbstractTransformer
implements adams.flow.transformer.FeatureGenerator<AbstractHeatmapFeatureGenerator>
    Applies a heatmap feature generator to the incoming heatmap and outputs the generated features.

    Input/output:
    - accepts:
       adams.data.heatmap.Heatmap
    - generates:
       adams.data.spreadsheet.Row


    -logging-level <OFF|SEVERE|WARNING|INFO|CONFIG|FINE|FINER|FINEST> (property: loggingLevel)
    The logging level for outputting errors and debugging output.
    default: WARNING
 
    -name <java.lang.String> (property: name)
    The name of the actor.
    default: HeatmapFeatureGenerator
 
    -annotation <adams.core.base.BaseAnnotation> (property: annotations)
    The annotations to attach to this actor.
    default: 
 
    -skip <boolean> (property: skip)
    If set to true, transformation is skipped and the input token is just forwarded 
    as it is.
    default: false
 
    -stop-flow-on-error <boolean> (property: stopFlowOnError)
    If set to true, the flow gets stopped in case this actor encounters an error;
     useful for critical actors.
    default: false
 
    -silent <boolean> (property: silent)
    If enabled, then no errors are output in the console.
    default: false
 
    -algorithm <adams.data.heatmapfeatures.AbstractHeatmapFeatureGenerator> (property: algorithm)
    The feature generation algorithm to use.
    default: adams.data.heatmapfeatures.Max -converter \"adams.data.featureconverter.SpreadSheet -data-row-type adams.data.spreadsheet.DenseDataRow -spreadsheet-type adams.data.spreadsheet.SpreadSheet\"
    Author:
    fracpete (fracpete at waikato dot ac dot nz)
    See Also:
    Serialized Form

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static String BACKUP_ALGORITHM
      the key for storing the current algorithm in the backup.
      static String BACKUP_QUEUE
      the key for storing the current objects in the backup.
      protected AbstractHeatmapFeatureGenerator m_ActualAlgorithm
      the actual algorithm to apply to the image.
      protected AbstractHeatmapFeatureGenerator m_Algorithm
      the algorithm to apply to the image.
      protected ArrayList m_Queue
      the generated objects.
      protected adams.core.VariableName m_VariableName
      the variable to listen to.

      • Fields inherited from class adams.flow.transformer.AbstractTransformer

        BACKUP_INPUT, BACKUP_OUTPUT, m_InputToken, m_OutputToken

      • Fields inherited from class adams.flow.core.AbstractActor

        m_Annotations, m_BackupState, m_DetectedObjectVariables, m_DetectedVariables, m_ErrorHandler, m_Executed, m_Executing, m_ExecutionListeningSupporter, m_FullName, m_LoggingPrefix, m_Name, m_Parent, m_ScopeHandler, m_Self, m_Silent, m_Skip, m_StopFlowOnError, m_StopMessage, m_Stopped, m_StorageHandler, m_VariablesUpdated

      • Fields inherited from class adams.core.option.AbstractOptionHandler

        m_OptionManager

      • Fields inherited from class adams.core.logging.LoggingObject

        m_Logger, m_LoggingIsEnabled, m_LoggingLevel

      • Fields inherited from interface adams.flow.core.Actor

        FILE_EXTENSION, FILE_EXTENSION_GZ

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Class[] accepts()
      Returns the class that the consumer accepts.
      String algorithmTipText()
      Returns the tip text for this property.
      protected Hashtable<String,​Object> backupState()
      Backs up the current state of the actor before update the variables.
      void defineOptions()
      Adds options to the internal list of options.
      protected String doExecute()
      Executes the flow item.
      Class[] generates()
      Returns the class of objects that it generates.
      AbstractHeatmapFeatureGenerator getAlgorithm()
      Returns the algorithm in use.
      String getQuickInfo()
      Returns a quick info about the actor, which will be displayed in the GUI.
      adams.core.VariableName getVariableName()
      Returns the name of the variable to monitor.
      String globalInfo()
      Returns a string describing the object.
      boolean hasPendingOutput()
      Checks whether there is pending output to be collected after executing the flow item.
      protected void initialize()
      Initializes the members.
      adams.flow.core.Token output()
      Returns the generated token.
      protected void pruneBackup()
      Removes entries from the backup.
      protected void reset()
      Resets the scheme.
      protected void restoreState​(Hashtable<String,​Object> state)
      Restores the state of the actor before the variables got updated.
      void setAlgorithm​(AbstractHeatmapFeatureGenerator value)
      Sets the algorithm to use.
      void setVariableName​(adams.core.VariableName value)
      Sets the name of the variable to monitor.
      void variableChanged​(adams.event.VariableChangeEvent e)
      Gets triggered when a variable changed (added, modified, removed).
      String variableNameTipText()
      Returns the tip text for this property.
      void wrapUp()
      Cleans up after the execution has finished.

      • Methods inherited from class adams.flow.transformer.AbstractTransformer

        currentInput, execute, hasInput, input, postExecute

      • Methods inherited from class adams.flow.core.AbstractActor

        annotationsTipText, canInspectOptions, canPerformSetUpCheck, cleanUp, compareTo, configureLogger, destroy, equals, finalUpdateVariables, findVariables, findVariables, forceVariables, forCommandLine, forName, forName, getAdditionalInformation, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowActors, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, handleException, hasErrorHandler, hasStopMessage, index, isBackedUp, isExecuted, isExecuting, isFinished, isHeadless, isStopped, nameTipText, performSetUpChecks, performVariableChecks, preExecute, pruneBackup, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, silentTipText, sizeOf, skipTipText, stopExecution, stopExecution, stopFlowOnErrorTipText, updateDetectedVariables, updatePrefix, updateVariables

      • Methods inherited from class adams.core.option.AbstractOptionHandler

        cleanUpOptions, finishInit, getDefaultLoggingLevel, getOptionManager, loggingLevelTipText, newOptionManager, setLoggingLevel, toCommandLine, toString

      • Methods inherited from class adams.core.logging.LoggingObject

        getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled

      • Methods inherited from interface adams.flow.core.Actor

        cleanUp, compareTo, destroy, equals, execute, findVariables, getAnnotations, getDefaultName, getDetectedVariables, getErrorHandler, getFlowExecutionListeningSupporter, getFullName, getName, getNextSibling, getParent, getParentComponent, getPreviousSibling, getRoot, getScopeHandler, getSilent, getSkip, getStopFlowOnError, getStopMessage, getStorageHandler, getVariables, handleError, hasErrorHandler, hasStopMessage, index, isExecuted, isFinished, isHeadless, isStopped, setAnnotations, setErrorHandler, setName, setParent, setSilent, setSkip, setStopFlowOnError, setUp, setVariables, shallowCopy, shallowCopy, sizeOf, stopExecution, stopExecution, toCommandLine

      • Methods inherited from interface adams.core.AdditionalInformationHandler

        getAdditionalInformation

      • Methods inherited from interface adams.core.logging.LoggingLevelHandler

        getLoggingLevel, setLoggingLevel

      • Methods inherited from interface adams.core.logging.LoggingSupporter

        getLogger, isLoggingEnabled

      • Methods inherited from interface adams.core.option.OptionHandler

        cleanUpOptions, getOptionManager

      • Methods inherited from interface adams.core.VariablesInspectionHandler

        canInspectOptions

    • Field Detail

      • BACKUP_QUEUE

        public static final String BACKUP_QUEUE
        the key for storing the current objects in the backup.
        See Also:
        Constant Field Values

      • BACKUP_ALGORITHM

        public static final String BACKUP_ALGORITHM
        the key for storing the current algorithm in the backup.
        See Also:
        Constant Field Values

      • m_VariableName

        protected adams.core.VariableName m_VariableName
        the variable to listen to.

      • m_Queue

        protected ArrayList m_Queue
        the generated objects.

    • Constructor Detail

      • HeatmapFeatureGenerator

        public HeatmapFeatureGenerator()

    • Method Detail

      • globalInfo

        public String globalInfo()
        Returns a string describing the object.
        Specified by:
        globalInfo in interface adams.core.GlobalInfoSupporter
        Specified by:
        globalInfo in class adams.core.option.AbstractOptionHandler
        Returns:
        a description suitable for displaying in the gui

      • defineOptions

        public void defineOptions()
        Adds options to the internal list of options.
        Specified by:
        defineOptions in interface adams.core.option.OptionHandler
        Overrides:
        defineOptions in class adams.flow.core.AbstractActor

      • initialize

        protected void initialize()
        Initializes the members.
        Overrides:
        initialize in class adams.flow.core.AbstractActor

      • reset

        protected void reset()
        Resets the scheme.
        Overrides:
        reset in class adams.flow.core.AbstractActor

      • algorithmTipText

        public String algorithmTipText()
        Returns the tip text for this property.
        Specified by:
        algorithmTipText in interface adams.flow.transformer.FeatureGenerator<AbstractHeatmapFeatureGenerator>
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • setVariableName

        public void setVariableName​(adams.core.VariableName value)
        Sets the name of the variable to monitor.
        Specified by:
        setVariableName in interface adams.flow.core.VariableMonitor
        Parameters:
        value - the name

      • getVariableName

        public adams.core.VariableName getVariableName()
        Returns the name of the variable to monitor.
        Specified by:
        getVariableName in interface adams.flow.core.VariableMonitor
        Returns:
        the name

      • variableNameTipText

        public String variableNameTipText()
        Returns the tip text for this property.
        Specified by:
        variableNameTipText in interface adams.flow.core.VariableMonitor
        Returns:
        tip text for this property suitable for displaying in the GUI or for listing the options.

      • getQuickInfo

        public String getQuickInfo()
        Returns a quick info about the actor, which will be displayed in the GUI.
        Specified by:
        getQuickInfo in interface adams.flow.core.Actor
        Specified by:
        getQuickInfo in interface adams.core.QuickInfoSupporter
        Overrides:
        getQuickInfo in class adams.flow.core.AbstractActor
        Returns:
        null if no info available, otherwise short string

      • pruneBackup

        protected void pruneBackup()
        Removes entries from the backup.
        Overrides:
        pruneBackup in class adams.flow.core.AbstractActor

      • backupState

        protected Hashtable<String,​Object> backupState()
        Backs up the current state of the actor before update the variables.
        Overrides:
        backupState in class adams.flow.transformer.AbstractTransformer
        Returns:
        the backup

      • restoreState

        protected void restoreState​(Hashtable<String,​Object> state)
        Restores the state of the actor before the variables got updated.
        Overrides:
        restoreState in class adams.flow.transformer.AbstractTransformer
        Parameters:
        state - the backup of the state to restore from

      • variableChanged

        public void variableChanged​(adams.event.VariableChangeEvent e)
        Gets triggered when a variable changed (added, modified, removed).
        Specified by:
        variableChanged in interface adams.flow.core.Actor
        Specified by:
        variableChanged in interface adams.event.VariableChangeListener
        Overrides:
        variableChanged in class adams.flow.core.AbstractActor
        Parameters:
        e - the event

      • accepts

        public Class[] accepts()
        Returns the class that the consumer accepts.
        Specified by:
        accepts in interface adams.flow.core.InputConsumer
        Returns:
        the Class of objects that can be processed

      • generates

        public Class[] generates()
        Returns the class of objects that it generates.
        Specified by:
        generates in interface adams.flow.core.OutputProducer
        Returns:
        adams.data.spreadsheet.Row.class

      • doExecute

        protected String doExecute()
        Executes the flow item.
        Specified by:
        doExecute in class adams.flow.core.AbstractActor
        Returns:
        null if everything is fine, otherwise error message

      • hasPendingOutput

        public boolean hasPendingOutput()
        Checks whether there is pending output to be collected after executing the flow item.
        Specified by:
        hasPendingOutput in interface adams.flow.core.OutputProducer
        Overrides:
        hasPendingOutput in class adams.flow.transformer.AbstractTransformer
        Returns:
        true if there is pending output

      • output

        public adams.flow.core.Token output()
        Returns the generated token.
        Specified by:
        output in interface adams.flow.core.OutputProducer
        Overrides:
        output in class adams.flow.transformer.AbstractTransformer
        Returns:
        the generated token

      • wrapUp

        public void wrapUp()
        Cleans up after the execution has finished.
        Specified by:
        wrapUp in interface adams.flow.core.Actor
        Overrides:
        wrapUp in class adams.flow.transformer.AbstractTransformer