Uses of Interface
adams.data.filter.Filter

Packages that use Filter

Package	Description
adams.data.filter
adams.data.outlier
adams.data.report
adams.flow.container
adams.flow.transformer
adams.gui.event
adams.gui.visualization.container
adams.gui.visualization.timeseries

Uses of Filter in adams.data.filter

Subinterfaces of Filter in adams.data.filter

Modifier and Type	Interface	Description
interface	BatchFilter<T extends DataContainer>	Interface for filters that can filter multiple data containers in one go.
interface	TrainableBatchFilter<T extends DataContainer>	Interface for trainable batch filters.

Classes in adams.data.filter that implement Filter

Modifier and Type	Class	Description
class	AbstractAutocorrelation<T extends DataContainer>	Abstract ancestor for autocorrelation filters.
class	AbstractBatchFilter<T extends DataContainer>	Ancestor for batch filters.
class	AbstractDatabaseConnectionFilter<T extends DataContainer>	Ancestor for filters that require database access.
class	AbstractDerivative<T extends DataContainer>	Abstract ancestor for Derivative filters.
class	AbstractEquiDistance<T extends DataContainer>	Abstract ancestor for filters that equi-distance the data.
class	AbstractEquiDistanceWithOffset<T extends DataContainer>	Abstract ancestor for filters that equi-distance the data.
class	AbstractFastWavelet<T extends DataContainer>	Abstract ancestor for Wavelet filters based on the JSci library.
class	AbstractFFT<T extends DataContainer>	Abstract ancestor for Fast Fourier Transform filters based on the JSci library.
class	AbstractFilter<T extends DataContainer>	Abstract base class for filters.
class	AbstractHistogram<T extends DataContainer>	Ancestor for filters that generate a histogram from the incoming data.
class	AbstractLOWESS<T extends DataContainer>	Abstract ancestor for LOWESS filters.
class	AbstractPreFilter<T extends DataContainer>	Abstract ancestor for filters that use pre-filtered data as the basis for manipulating the original data.
class	AbstractSavitzkyGolay<T extends DataContainer>	Abstract ancestor for Savitzky-Golay filters.
class	AbstractSAX<T extends DataContainer>	Ancestor for SAX filters.
class	AbstractScript	Ancestor for filter scripts.
class	AbstractScriptedFilter	Abstract ancestor for filters that execute external scripts.
class	AbstractSimpleSavitzkyGolay<T extends DataContainer>	Abstract ancestor for simple Savitzky-Golay filters.
class	BaselineCorrection<T extends DataContainer>	A filter that runs a baseline correction scheme over the data.
class	DownSample<T extends DataContainer>	A filter that returns only every n-th data point.
class	DownSize<T extends DataContainer>	A filter that picks a specified number of evenly spaced data points from the data.
class	Groovy	A filter that uses a Groovy script for processing the data.
class	MultiFilter<T extends DataContainer>	A meta-filter that runs multiple filters over the data.
class	OutlierDetector<T extends DataContainer>	A filter that runs an outlier detector over the data and attaches the generated detections as notes to the chromatogram.
class	PassThrough<T extends DataContainer>	A dummy filter that just passes the data through.
class	RemoveNoise<T extends DataContainer & Mergeable>	A filter that removes noise from the data with a user-supplied noise level algorithm.
class	ReportFilter<T extends DataContainer>	A filter that modifies the reports of data containers being passed through.
class	Scripted	A filter that uses any scripting handler for processing the data with a script located in the specified file.
class	Smoothing<T extends DataContainer>	A filter that runs a smoothing scheme over the data.
class	TimeseriesAutocorrelation	Performs autocorrelation on the timeseries.
class	TimeseriesChangeResolution	Generates a new timeseries with a (user-defined) fixed-length interval between data points.
class	TimeseriesDerivative	A filter for generating derivatives of timeseries data.
class	TimeseriesEquiDistance	A filter for interpolating the values of a time series.
class	TimeseriesFastWavelet	A filter that transforms the data with a wavelet. For more information see: (2009).
class	TimeseriesFFT	A filter that transforms the data with Fast Fourier Transform. For more information see: Mark Hale (2009).
class	TimeseriesHistogram	Generates a histogram from the timeseries.
class	TimeseriesLOWESS	A filter that applies LOWESS smoothing. For more information see: WikiPedia.
class	TimeseriesResetTimestamps	Resets the timestamps, makes them start at the specified date/time.
class	TimeseriesRound	Rounds the values of the timeseries points.
class	TimeseriesRowNorm	Row wise normalization.
class	TimeseriesSavitzkyGolay	A filter that applies Savitzky-Golay smoothing. For more information see: A.
class	TimeseriesSAX	Performs Symbolic Aggregate approXimation (SAX). The data must be normalized using adams.data.filter.RowNorm beforehand. For more information see: Chiu, B., Keogh, E., Lonardi, S.
class	TimeseriesSetStart	Sets the starting point of the timeseries to a new fixed timestamp and all other data points accordingly.
class	TimeseriesShiftTimestamps	Shifts the timestamps of the timeseries by a calculated amount. The amount is either the difference between the 'new' timestamp and a timestamp from the report or a supplied timestamp. Accepted date formats (unless custom format specified): yyyy-MM-dd HH:mm:ss yyyy-MM-dd HH:mm:ss.S yyyy-MM-dd
class	TimeseriesShiftValues	Shifts the values of the timeseries by the specified amount (up or down, depending on the sign).
class	TimeseriesValueSubset	Generates a new timeseries with the first block of values that fits between the specified min/max (both included).
class	TimeseriesWindow	Leaves only the specified window in the timeseries (borders included). The matching can be inverted, i.e., everything but the window is returned.

Fields in adams.data.filter declared as Filter

Modifier and Type	Field	Description
protected Filter<T>	AbstractGlobalDataContainerFilter.m_DefaultFilter	the filter to apply to the data before caching.
protected Filter	AbstractFilter.FilterJob.m_Filter	the filter to use.
protected Filter<T>	AbstractGlobalDataContainerFilter.m_Filter	the filter being used in this table object.
protected Filter	AbstractPreFilter.m_Filter	the filter to apply to the data first.
protected Filter	Groovy.m_FilterObject	the loaded script object.
protected Filter	Scripted.m_FilterObject	the loaded script object.
protected Filter<T>[]	MultiFilter.m_Filters	the filters.

Methods in adams.data.filter that return Filter

Modifier and Type	Method	Description
static Filter	AbstractFilter.forCommandLine(String cmdline)	Instantiates the filter from the given commandline (i.e., classname and optional options).
protected Filter	AbstractPreFilter.getDefaultFilter()	Returns the default pre-filter to use.
Filter	AbstractFilter.FilterJob.getFilter()	Returns the filter being used.
Filter	AbstractGlobalDataContainerFilter.getFilter()	Returns the filter used to pre-process the data before it is cached.
Filter	AbstractPreFilter.getFilter()	Returns the current pre-filter.
Filter<T>[]	MultiFilter.getSubFilters()	Returns the filters in use.
Filter<T>	AbstractFilter.shallowCopy()	Returns a shallow copy of itself, i.e., based on the commandline options.
Filter<T>	AbstractFilter.shallowCopy(boolean expand)	Returns a shallow copy of itself, i.e., based on the commandline options.
Filter<T>	Filter.shallowCopy()	Returns a shallow copy of itself, i.e., based on the commandline options.
Filter<T>	Filter.shallowCopy(boolean expand)	Returns a shallow copy of itself, i.e., based on the commandline options.

Methods in adams.data.filter with parameters of type Filter

Modifier and Type	Method	Description
void	AbstractGlobalDataContainerFilter.setFilter(Filter value)	Sets the filter to run over the data before it is cached.
void	AbstractPreFilter.setFilter(Filter value)	Sets the pre-filter.
void	MultiFilter.setSubFilters(Filter<T>[] value)	Sets the filters to use.

Constructors in adams.data.filter with parameters of type Filter

Constructor	Description
FilterJob(Filter filter, T data)	Initializes the job.

Uses of Filter in adams.data.outlier

Fields in adams.data.outlier declared as Filter

Modifier and Type	Field	Description
protected Filter	FilteredOutlierDetector.m_Filter	the filter to use.

Methods in adams.data.outlier that return Filter

Modifier and Type	Method	Description
Filter	FilteredOutlierDetector.getFilter()	Returns the filter in use.

Methods in adams.data.outlier with parameters of type Filter

Modifier and Type	Method	Description
void	FilteredOutlierDetector.setFilter(Filter value)	Sets the filter to use.

Uses of Filter in adams.data.report

Fields in adams.data.report declared as Filter

Modifier and Type	Field	Description
protected Filter	FilteredReportFilter.m_DataFilter	the pre-filter for filtering the data.

Methods in adams.data.report that return Filter

Modifier and Type	Method	Description
Filter	FilteredReportFilter.getDataFilter()	Returns the data filter.

Methods in adams.data.report with parameters of type Filter

Modifier and Type	Method	Description
void	FilteredReportFilter.setDataFilter(Filter value)	Sets the data filter.

Uses of Filter in adams.flow.container

Classes in adams.flow.container with type parameters of type Filter

Modifier and Type	Class	Description
class	AbstractFilterContainer<F extends Filter,D extends DataContainer>	A container for filters and the filtered data.

Constructors in adams.flow.container with parameters of type Filter

Constructor	Description
TimeseriesFilterContainer(Object input, Filter filter, Timeseries data)	Initializes the container with the filter and the associated data.

Uses of Filter in adams.flow.transformer

Fields in adams.flow.transformer declared as Filter

Modifier and Type	Field	Description
protected Filter	AbstractFilter.m_Filter	the filter to apply.

Methods in adams.flow.transformer that return Filter

Modifier and Type	Method	Description
Filter	AbstractFilter.getFilter()	Returns the filter in use.

Methods in adams.flow.transformer with parameters of type Filter

Modifier and Type	Method	Description
void	AbstractFilter.setFilter(Filter value)	Sets the filter to use.

Uses of Filter in adams.gui.event

Fields in adams.gui.event declared as Filter

Modifier and Type	Field	Description
protected Filter<T>	FilterEvent.m_Filter	the filter to use.

Methods in adams.gui.event that return Filter

Modifier and Type	Method	Description
Filter<T>	FilterEvent.getFilter()	Returns the filter.

Constructors in adams.gui.event with parameters of type Filter

Constructor	Description
FilterEvent(FilterDialog source, Filter<T> filter, boolean overlay)	Initializes the event.

Uses of Filter in adams.gui.visualization.container

Fields in adams.gui.visualization.container declared as Filter

Modifier and Type	Field	Description
protected Filter<T>	FilterDialog.m_CurrentFilter	the current filter.

Methods in adams.gui.visualization.container that return Filter

Modifier and Type	Method	Description
protected Filter<T>	FilterDialog.getDefaultFilter()	Returns the default filter.
Filter<T>	FilterDialog.getFilter()	Returns the current filter.

Methods in adams.gui.visualization.container with parameters of type Filter

Modifier and Type	Method	Description
void	FilterDialog.setFilter(Filter<T> value)	Sets the filter to use.

Uses of Filter in adams.gui.visualization.timeseries

Fields in adams.gui.visualization.timeseries declared as Filter

Modifier and Type	Field	Description
protected Filter<Timeseries>	TimeseriesExplorer.m_CurrentFilter	the current filter.