Package adams.flow.sink.sequenceplotter

Class AligningSequences

java.lang.Object

adams.core.logging.LoggingObject

adams.core.logging.CustomLoggingLevelObject

adams.core.option.AbstractOptionHandler

adams.flow.sink.sequenceplotter.AbstractSequencePostProcessor

adams.flow.sink.sequenceplotter.SimplePruning

adams.flow.sink.sequenceplotter.AligningSequences

All Implemented Interfaces:

Destroyable, GlobalInfoSupporter, LoggingLevelHandler, LoggingSupporter, OptionHandler, SizeOfHandler, Serializable

public class AligningSequences
extends SimplePruning

Aligns the sequences on the left.

Valid options are:

-D <int> (property: debugLevel)
    The greater the number the more additional info the scheme may output to
    the console (0 = off).
    default: 0
    minimum: 0
 

-limit <int> (property: limit)
    The size limit for sequences; use -1 for unlimited.
    default: -1
    minimum: -1
 

Version:

$Revision$

Author:

fracpete (fracpete at waikato dot ac dot nz), Joaquin Vanschoren (joaquin at liacs dot nl)

See Also:

Serialized Form

Field Summary

Fields inherited from class adams.flow.sink.sequenceplotter.SimplePruning

m_Limit

Fields inherited from class adams.core.option.AbstractOptionHandler

m_OptionManager

Fields inherited from class adams.core.logging.LoggingObject

m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors

Constructor	Description
AligningSequences()

Method Summary

Modifier and Type	Method	Description
String	globalInfo()	Returns a string describing the object.
boolean	postProcess(XYSequenceContainerManager manager, String plotName)	Post-processes the sequences.

Methods inherited from class adams.flow.sink.sequenceplotter.SimplePruning

defineOptions, getLimit, limitTipText, setLimit

Methods inherited from class adams.core.option.AbstractOptionHandler

cleanUpOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, initialize, loggingLevelTipText, newOptionManager, reset, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject

configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.logging.LoggingLevelHandler

getLoggingLevel

Constructor Detail

AligningSequences

public AligningSequences()

Method Detail

globalInfo

public String globalInfo()

Returns a string describing the object.

Specified by:

globalInfo in interface GlobalInfoSupporter

Overrides:

globalInfo in class SimplePruning

Returns:

a description suitable for displaying in the gui

postProcess

public boolean postProcess(XYSequenceContainerManager manager,
                           String plotName)

Post-processes the sequences.

Overrides:

postProcess in class SimplePruning

Parameters:

manager - the sequence manager

plotName - the plot that was modified

Returns:

true if any sequence was modified