AbstractMetaDataColor (adams-pom 24.12.0-SNAPSHOT API)

java.lang.Object
- adams.core.logging.LoggingObject
- - adams.core.logging.CustomLoggingLevelObject
  - - adams.core.option.AbstractOptionHandler
    - - adams.gui.visualization.sequence.metadatacolor.AbstractMetaDataColor<T>

All Implemented Interfaces:

Destroyable, GlobalInfoSupporter, LoggingLevelHandler, LoggingSupporter, OptionHandler, SizeOfHandler, Serializable

Direct Known Subclasses:

ColorPerLabel, ColorPerRegExpGroup, Dummy
```
public abstract class AbstractMetaDataColor<T extends XYSequencePoint>
extends AbstractOptionHandler
```
Ancestor for schemes extracting the color from a sequence point's meta-data.

Author:

FracPete (fracpete at waikato dot ac dot nz)

See Also:

Serialized Form

Field Summary
- Fields inherited from class adams.core.option.AbstractOptionHandler
  m_OptionManager
- Fields inherited from class adams.core.logging.LoggingObject
  m_Logger, m_LoggingIsEnabled, m_LoggingLevel

Constructor Summary

Constructors
Constructor Description

AbstractMetaDataColor()

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`abstract Color`	`getColor(T point, Color defColor)`	Extracts the color from the meta-data.
`abstract void`	`initialize(List<T> points)`	Initializes the meta-data color scheme.

Methods inherited from class adams.core.option.AbstractOptionHandler
cleanUpOptions, defineOptions, destroy, finishInit, getDefaultLoggingLevel, getOptionManager, globalInfo, initialize, loggingLevelTipText, newOptionManager, reset, setLoggingLevel, toCommandLine, toString

Methods inherited from class adams.core.logging.LoggingObject
configureLogger, getLogger, getLoggingLevel, initializeLogging, isLoggingEnabled, sizeOf

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface adams.core.logging.LoggingLevelHandler
getLoggingLevel

- Constructor Detail
  - AbstractMetaDataColor
```
public AbstractMetaDataColor()
```
- Method Detail
  - initialize
```
public abstract void initialize(List<T> points)
```
    Initializes the meta-data color scheme.
    
    Parameters:
    
    points - the points to initialize with
  - getColor
```
public abstract Color getColor(T point,
                               Color defColor)
```
    Extracts the color from the meta-data.
    
    Parameters:
    
    point - the point to get the color from
    
    defColor - the default color to use
    
    Returns:
    
    the color