Uses of Class
adams.data.io.input.AbstractSpectrumReader

Packages that use AbstractSpectrumReader

Package	Description
adams.data.io.input
adams.flow.standalone.rats
adams.gui.tools.previewbrowser
adams.gui.visualization.spectrum

Uses of AbstractSpectrumReader in adams.data.io.input

Subclasses of AbstractSpectrumReader in adams.data.io.input

Modifier and Type	Class	Description
class	AbstractByteBasedSpectrumReader	Ancestor for spectrum readers that use binary data, i.e., byte arrays.
class	AbstractJCampSpectrumReader	Ancestor for JCamp spectrum formats.
class	AbstractTextBasedSpectrumReader	Ancestor for spectrum readers that are text-based.
class	AniMLSpectrumReader	Reads spectra in AniML (Analytical Information Markup Language) format. For more information see: http://animl.sourceforge.net/ Valid options are:
class	ASCIIXYSpectrumReader	Reads spectra in ASCII XY format.
class	ASCSpectrumReader	Reads spectra in BLGG ASC format.
class	CALSpectrumReader	Reads spectra in BLGG ASC format.
class	CMLSpectrumReader	Reads spectra in CML (Chemical Markup Language) format. For more information see: http://www.xml-cml.org/ Valid options are:
class	ColumnWiseSpreadSheetSpectrumReader	Reads spectra from columns in a spreadsheet obtained with the specified spreadsheet reader.
class	DPTSpectrumReader	Reads spectra in DPT format.
class	ExtractIdAndTypeSpectrumReader	Uses the specified ID and group extractor to obtain and update sample ID and type of the spectra read by the specified base reader.
class	FilteredSpectrumReader	Uses the specified reader to read the spectral data before applying the supplied filter to it.
class	JCampDX2SpectrumReader	Reads spectra in JCamp-DX format. For more information see: http://www.jcamp-dx.org/
class	JCampDXSpectrumReader	Reads spectra in JCamp-DX format. For more information see: http://www.jcamp-dx.org/ Valid options are:
class	JsonSpectrumReader	Reads spectra in JSON format. Input format (single spectrum): - complete report stored: { "id": "someid", "format": "NIR", "waves": [1.0, 2.0], "amplitudes": [1.1, 2.1], "report": { "Sample ID": "someid", "GLV2": 1.123, "valid": true } } - specific reference and meta-data values stored: { "id": "someid", "format": "NIR", "waves": [1.0, 2.0], "amplitudes": [1.1, 2.1], "reference": { "GLV2": 1.123 }, "meta-data": { "valid": true } } Multiple spectra are wrapped in an array called 'spectra'.
class	MPSSpectrumReader	Reads XRF spectra in MPS format.
class	NIRSpectrumReader	Reads spectra in FOSS NIR format.
class	OpusSpectrumReader	Reads spectra in OPUS format.
class	OpusSpectrumReaderExt	Reads spectra in OPUS format (extended version).
class	RelabSpectrumReader	Reads spectra in Relab ASCII format. http://www.planetary.brown.edu/relabdata/
class	RowWiseSpreadSheetSpectrumReader	Reads spectra from rows in a spreadsheet obtained with the specified spreadsheet reader. Sample ID and sample data columns get removed automatically from the range of wave columns.
class	ScioLabExportSpectrumReader	Reads the CSV export from the SCiO Lab web site.
class	SimpleSpectrumReader	Reads spectra in the internal CSV format.
class	SoilCaresScannerSpectrumReader	Reads spectra from ZIP files generated by the SoilCares Scanner app.
class	SPASpectrumReader	Loads spectral data files in Nicolet SPA format.
class	SPCSpectrumReader	Reads spectra in SPC format (Galactic Universal Data Format) format. See the specifications here: http://serswiki.bme.gatech.edu/images/a/ae/SPC_Open_Specification.pdf
class	SpecLibSpectrumReader	Reads spectra in USGS SpecLib ASCII format. http://speclab.cr.usgs.gov/spectral.lib06/
class	TrinamixSpectrumJsonReader	Reader for the trinamiX (https://trinamixsensing.com/) JSON format.
class	TrinamixSpectrumReader	Reader for the trinamiX (https://trinamixsensing.com/) CSV format.
class	UnscramblerSpectrumReader
class	ZippedSpectrumReader	Reads spectra from the zip file using the specified base reader.

Fields in adams.data.io.input declared as AbstractSpectrumReader

Modifier and Type	Field	Description
protected AbstractSpectrumReader	ExtractIdAndTypeSpectrumReader.m_Reader	the base reader.
protected AbstractSpectrumReader	FilteredSpectrumReader.m_Reader	the underlying reader.
protected AbstractSpectrumReader	ZippedSpectrumReader.m_Reader	the base reader to use.

Methods in adams.data.io.input that return AbstractSpectrumReader

Modifier and Type	Method	Description
protected AbstractSpectrumReader	FilteredSpectrumReader.getDefaultReader()	Returns the default instrument of the spectra.
AbstractSpectrumReader	ExtractIdAndTypeSpectrumReader.getReader()	Returns the base reader to use.
AbstractSpectrumReader	FilteredSpectrumReader.getReader()	Returns the underlying reader.
AbstractSpectrumReader	ZippedSpectrumReader.getReader()	Returns the reader to use.

Methods in adams.data.io.input with parameters of type AbstractSpectrumReader

Modifier and Type	Method	Description
void	ExtractIdAndTypeSpectrumReader.setReader(AbstractSpectrumReader value)	Sets the base reader to use.
void	FilteredSpectrumReader.setReader(AbstractSpectrumReader value)	Sets the underlying reader.
void	ZippedSpectrumReader.setReader(AbstractSpectrumReader value)	Sets the reader to use.

Uses of AbstractSpectrumReader in adams.flow.standalone.rats

Fields in adams.flow.standalone.rats declared as AbstractSpectrumReader

Modifier and Type	Field	Description
protected AbstractSpectrumReader	LoadMultiSpectrumFileOutput.m_Reader	the sprectrum reader to use.
protected AbstractSpectrumReader	LoadSpectrumFileOutput.m_Reader	the sprectrum reader to use.

Methods in adams.flow.standalone.rats that return AbstractSpectrumReader

Modifier and Type	Method	Description
protected AbstractSpectrumReader	LoadMultiSpectrumFileOutput.getDefaultReader()	Returns the default reader to use.
protected AbstractSpectrumReader	LoadSpectrumFileOutput.getDefaultReader()	Returns the default reader to use.
AbstractSpectrumReader	LoadMultiSpectrumFileOutput.getReader()	Returns the reader in use.
AbstractSpectrumReader	LoadSpectrumFileOutput.getReader()	Returns the reader in use.

Methods in adams.flow.standalone.rats with parameters of type AbstractSpectrumReader

Modifier and Type	Method	Description
void	LoadMultiSpectrumFileOutput.setReader(AbstractSpectrumReader value)	Sets the reader to use.
void	LoadSpectrumFileOutput.setReader(AbstractSpectrumReader value)	Sets the reader to use.

Uses of AbstractSpectrumReader in adams.gui.tools.previewbrowser

Methods in adams.gui.tools.previewbrowser that return AbstractSpectrumReader

Modifier and Type	Method	Description
protected abstract AbstractSpectrumReader	AbstractSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	ASCIIXYSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	ASCSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	CALSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	CMLSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	DPTSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	JCampDX2SpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	JCampDXSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	JsonSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	MPSSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	NIRSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	OpusSpectrumExtHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	OpusSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	RelabSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	SimpleSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	SPASpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	SPCSpectrumHandler.getReader(File file)	Returns the reader to use.
protected AbstractSpectrumReader	SpecLibSpectrumHandler.getReader(File file)	Returns the reader to use.

Uses of AbstractSpectrumReader in adams.gui.visualization.spectrum

Methods in adams.gui.visualization.spectrum with parameters of type AbstractSpectrumReader

Modifier and Type	Method	Description
void	SpectrumPanelWithSampleData.display(AbstractSpectrumReader reader, File file)	Displays the spectrum.
protected void	MultiSpectrumPanel.load(AbstractSpectrumReader reader)	Loads the spectra using the configured reader.