Uses of Interface
adams.db.DatabaseConnectionHandler

Packages that use DatabaseConnectionHandler

Package	Description
adams.data.baseline
adams.data.filter
adams.data.instances
adams.data.noise
adams.data.outlier
adams.data.report
adams.data.smoothing
adams.db
adams.db.upgrade
adams.flow.condition.bool
adams.flow.sink.sequenceplotter
adams.gui
adams.gui.application
adams.gui.core
adams.gui.goe
adams.gui.menu
adams.gui.scripting
adams.gui.selection
adams.gui.tools
adams.gui.visualization.container
adams.gui.visualization.instance
adams.gui.visualization.report
adams.gui.visualization.sequence
adams.gui.visualization.spreadsheet
adams.gui.visualization.timeseries
adams.terminal.application
adams.tools

Uses of DatabaseConnectionHandler in adams.data.baseline

Classes in adams.data.baseline that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionBaselineCorrection<T extends DataContainer>	Ancestor for baseline correction schemes that require database access.
class	SlidingWindow<T extends DataContainer>	Applies a baseline correction scheme on partitions of the data with a sliding window approach.

Uses of DatabaseConnectionHandler in adams.data.filter

Classes in adams.data.filter that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionFilter<T extends DataContainer>	Ancestor for filters that require database access.
class	BaselineCorrection<T extends DataContainer>	A filter that runs a baseline correction scheme over the data.
class	MultiFilter<T extends DataContainer>	A meta-filter that runs multiple filters over the data.
class	OutlierDetector<T extends DataContainer>	A filter that runs an outlier detector over the data and attaches the generated detections as notes to the chromatogram.
class	ReportFilter<T extends DataContainer>	A filter that modifies the reports of data containers being passed through.
class	Smoothing<T extends DataContainer>	A filter that runs a smoothing scheme over the data.

Uses of DatabaseConnectionHandler in adams.data.instances

Classes in adams.data.instances that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractInstanceGenerator<T extends DataContainer & ReportHandler>	Abstract base class for schemes that turn temperature profiles into weka.core.Instance objects.

Uses of DatabaseConnectionHandler in adams.data.noise

Classes in adams.data.noise that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionDenoiser<T extends DataContainer>	Ancestor for denoisers that require database access.

Uses of DatabaseConnectionHandler in adams.data.outlier

Classes in adams.data.outlier that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionOutlierDetector<T extends DataContainer>	Ancestor for outlier detectors that require a database connection.
class	FilteredOutlierDetector<T extends DataContainer>	A meta detector that first filters the data through a filter before pushing it through the base detector.
class	MultiOutlierDetector<T extends DataContainer>	A meta-detector that runs multiple outlier detectors over the data.

Uses of DatabaseConnectionHandler in adams.data.report

Classes in adams.data.report that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionReportFilter<T extends DataContainer>	Ancestor for report filters that require database access.
class	FilteredReportFilter<T extends DataContainer>	This filter first pushes the data through the provided data filter before applying the actual report filter.

Uses of DatabaseConnectionHandler in adams.data.smoothing

Classes in adams.data.smoothing that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionSmoother<T extends DataContainer>	Ancestor for filters that require database access.

Uses of DatabaseConnectionHandler in adams.db

Classes in adams.db that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseObjectWithOptionHandling	Abstract ancestor for classes that need to be able to change the database connection with commandline parameters.
class	AbstractTableCleanUp	Ancestor of classes that clean up tables in some fashion.
class	AbstractTimeWindowTableCleanUp	Ancestor for clean up schemes that use a time window.
class	SQLTableCleanUp	Executes an SQL statement to clean up the table.

Uses of DatabaseConnectionHandler in adams.db.upgrade

Classes in adams.db.upgrade that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractTableUpgrade	Abstract superclass for all helper classes that upgrade tables in one way or another.
class	FixInvalidMySQLTimestampDefault	Replaces invalid MySQL default values of TIMESTAMP columns.
class	PassThrough	A dummy upgrader, does nothing.

Uses of DatabaseConnectionHandler in adams.flow.condition.bool

Classes in adams.flow.condition.bool that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractBooleanDatabaseCondition	Ancestor for conditions that operate on a database.
class	TableExists	Checks whether table(s) exist that match the given regular expression.

Uses of DatabaseConnectionHandler in adams.flow.sink.sequenceplotter

Classes in adams.flow.sink.sequenceplotter that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	SequencePlotterPanel	The panel that plots all the sequences.

Uses of DatabaseConnectionHandler in adams.gui

Classes in adams.gui that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	Main	GUI for ADAMS.

Uses of DatabaseConnectionHandler in adams.gui.application

Classes in adams.gui.application that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractApplicationFrame	Abstract frame class for applications.

Uses of DatabaseConnectionHandler in adams.gui.core

Classes in adams.gui.core that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	BasePanelWithDatabaseConnection	Ancestor for panels that depend on a database connection.
class	SqlConnectionPanel	Panel for database connection.

Uses of DatabaseConnectionHandler in adams.gui.goe

Classes in adams.gui.goe that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDatabaseConnectionAwarePropertyEditorSupport	Ancestor for GOE editors that are DatabaseConnectionChangeListeners and need to de-register correctly.

Uses of DatabaseConnectionHandler in adams.gui.menu

Classes in adams.gui.menu that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
static class	AbstractClassifierBasedGeneticAlgorithmWizard.PerformancePlot	For plotting the performance of the genetic algorithm.

Uses of DatabaseConnectionHandler in adams.gui.scripting

Classes in adams.gui.scripting that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractScriptingDialog	A dialog for loading/saving and executing scripts.
class	AbstractScriptingEngine	Processes scripting commands.
class	ScriptingDialog	A dialog for loading/saving and executing scripts.
class	ScriptingEngine	Processes scripting commands.

Uses of DatabaseConnectionHandler in adams.gui.selection

Classes in adams.gui.selection that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractConditionalDatabaseSelectionPanel<T,C extends AbstractConditions>	Abstract ancestor for selection panels that allow a conditional display of the items collected from the database.
class	AbstractDatabaseSelectionDialog<T,P extends AbstractDatabaseSelectionPanel>	Abstract ancestor for dialogs that allow the selection of items from a table, using a database as backend.
class	AbstractDatabaseSelectionPanel<T>	Abstract ancestor for table-based selection panels that use the database as backend.
class	AbstractSelectDatabaseFieldDialog<T extends AbstractField>	Dialog for selecting fields (obtained from a database).
class	AbstractSelectDatabaseFieldPanel<T extends AbstractField>	A panel for selecting a field (obtained from a database).

Uses of DatabaseConnectionHandler in adams.gui.tools

Classes in adams.gui.tools that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractManagementPanelWithDatabase<T extends Comparable>	A panel for managing the objects stored in a database.
class	AbstractManagementPanelWithDatabaseConnectionListener<T extends Comparable>	Ancestor for management panels that listen to changes of the global database connection.
class	AbstractManagementPanelWithSelectableDatabase<T extends Comparable>	A panel for managing the objects stored in a database.
class	LogEntryDatabaseViewerPanel	For viewing LogEntry records stored in the database.

Uses of DatabaseConnectionHandler in adams.gui.visualization.container

Subinterfaces of DatabaseConnectionHandler in adams.gui.visualization.container

Modifier and Type	Interface	Description
interface	DatabaseContainerManager<T extends AbstractContainer>	Interface for container managers that manage containers encapsulating database objects.

Classes in adams.gui.visualization.container that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractDataContainerZoomOverviewPanel<P extends DataContainerPanel,C extends Paintlet,Z extends AbstractDataContainerZoomOverviewPaintlet,T extends DataContainer,M extends AbstractContainerManager>	Panel that shows the zoom in the data container panel as overlay.
class	DataContainerPanel<T extends DataContainer,M extends AbstractContainerManager>	Special panel for displaying the DataContainer data.
class	DataContainerPanelWithContainerList<T extends DataContainer,M extends AbstractContainerManager,C extends AbstractContainer>	Data container panel with a container list in the side panel.
class	DataContainerPanelWithSidePanel<T extends DataContainer,M extends AbstractContainerManager>	Special panel for displaying the DataContainer data and a side panel with additional information.

Uses of DatabaseConnectionHandler in adams.gui.visualization.instance

Classes in adams.gui.visualization.instance that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	InstancePanel	A panel for displaying instances.
class	InstanceZoomOverviewPanel	Panel that shows the zoom in the TIC panel as overlay.

Uses of DatabaseConnectionHandler in adams.gui.visualization.report

Classes in adams.gui.visualization.report that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	ReportContainerManager	A container manager for Report objects.

Uses of DatabaseConnectionHandler in adams.gui.visualization.sequence

Classes in adams.gui.visualization.sequence that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	XYSequencePanel	A panel for displaying XY sequences.

Uses of DatabaseConnectionHandler in adams.gui.visualization.spreadsheet

Classes in adams.gui.visualization.spreadsheet that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	SpreadSheetRowPanel	A panel for displaying instances.
class	SpreadSheetRowZoomOverviewPanel	Panel that shows the zoom in the TIC panel as overlay.

Uses of DatabaseConnectionHandler in adams.gui.visualization.timeseries

Classes in adams.gui.visualization.timeseries that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	TimeseriesContainerManager<C extends TimeseriesContainer>	A handler for the Timeseries containers.
class	TimeseriesExplorer	A panel for exploring Timeseries, manipulating them with filters, etc.
class	TimeseriesPanel<T extends Timeseries,M extends TimeseriesContainerManager<C>,C extends TimeseriesContainer>	Special panel for displaying the spectral data.
class	TimeseriesZoomOverviewPanel	Panel that shows the zoom in the timeseries panel as overlay.

Uses of DatabaseConnectionHandler in adams.terminal.application

Classes in adams.terminal.application that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractTerminalApplication	Ancestor for terminal-based applications.

Uses of DatabaseConnectionHandler in adams.tools

Classes in adams.tools that implement DatabaseConnectionHandler

Modifier and Type	Class	Description
class	AbstractAddRemoveTimeWindowDatabaseTool	Ancestor for tools that add or remove stuff in the database.
class	AbstractDatabaseTool	Abstract ancestor for tools that need database access.
class	AbstractTimeWindowDatabaseTool	Abstract ancestor for database tools that act within a time frame.
class	DropTables	Drops all tables that match a regular expression (matching sense can be inverted).
class	InitializeTables	Makes sure that all tables exist and are initialized.
class	TableUpgrade	Tool for running a specific table upgrade.
class	TruncateTables	Truncates all tables that match a regular expression (matching sense can be inverted).